Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00907
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 109 3e-24
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 30 1.8
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 29 3.1
08_02_1390 - 26665605-26665933,26665939-26666023 29 4.1
08_02_0224 + 14457427-14457879 29 4.1
07_01_0812 + 6381428-6381880 29 4.1
05_03_0398 - 13515850-13516302 29 4.1
04_04_0900 + 29232365-29232931 29 4.1
04_03_0413 + 15612568-15613005 29 4.1
04_01_0225 + 2836634-2837086 29 4.1
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 29 5.4
05_06_0070 + 25342965-25343882,25343968-25344618 28 7.2
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 28 9.5
06_01_0896 - 6889754-6890236 28 9.5
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 109 bits (261), Expect = 3e-24
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = +2
Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
+ ++TIA ALG ERT+ ELIPFL+E DEDEVLLA+AE+LG FI VGG E AH LLPP
Sbjct: 31 RRLSTIARALGEERTRKELIPFLSENNDDEDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90
Query: 425 LETLAAVEETVVRDKAVASL 484
LETL VEET VRDKAV SL
Sbjct: 91 LETLCTVEETCVRDKAVESL 110
Score = 103 bits (247), Expect = 2e-22
Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +1
Query: 487 CRCRAPQPQA-LEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRS 663
CR A ++ + + FVP+V+RLA G+WFT+R S+CGLF + YP +KAELR +
Sbjct: 111 CRIGAQMKESDIVDWFVPVVKRLAAGEWFTARVSSCGLFHIAYPSAPDQLKAELRTIYGQ 170
Query: 664 LCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDL 762
LCQDD PMVRRAAA LG+FA VE Y+K+++
Sbjct: 171 LCQDDMPMVRRAAASNLGKFAATVEQNYLKTEV 203
Score = 55.2 bits (127), Expect = 5e-08
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 168 DESLYPIAVLIDELKNEDVQLRLNSIKKL 254
DE LYPIA+LIDELKNED+QLRLNSI++L
Sbjct: 5 DEPLYPIAILIDELKNEDIQLRLNSIRRL 33
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 493 CRAPQPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAE-LRQHFRSLC 669
CR PQ +H +P V+ L+ R++ + P + E L F SL
Sbjct: 308 CRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLL 367
Query: 670 QDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLFP 768
+D+ P VR KL + +V+ I+ + L P
Sbjct: 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 278 VERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGG--GEFAHCLLPPLETLAAVEE 451
+E +S+L P E +Y +LL A ++ V G G F P L AAV
Sbjct: 317 IESLESKLSPRQKEALYSAYVLLLLHANKIDQAHEFVSGLLGMFQDSTFPVL-LQAAVH- 374
Query: 452 TVVRDKAVASLRAVAEHHSRKHSRNT 529
VR+K V V ++ KH N+
Sbjct: 375 --VREKKVQKAEEVLSQYAEKHPENS 398
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 434 LAAVEETVVRDKAVASLRAVAEHHSRKHSRNTLCH*YSALLEETGSL 574
L+ +++T+ + A A RA+ E R+H + T H +ALL L
Sbjct: 5 LSTIQQTLTPEAAAALARAMDEAGRRRHGQTTPLHVAAALLAAPAGL 51
>08_02_1390 - 26665605-26665933,26665939-26666023
Length = 137
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 118 ERLRRRRWRWRWRG 131
>08_02_0224 + 14457427-14457879
Length = 150
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 131 ERLRRRRWRWRWRG 144
>07_01_0812 + 6381428-6381880
Length = 150
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 131 ERLRRRRWRWRWRG 144
>05_03_0398 - 13515850-13516302
Length = 150
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 131 ERLRRRRWRWRWRG 144
>04_04_0900 + 29232365-29232931
Length = 188
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 169 ERLRRRRWRWRWRG 182
>04_03_0413 + 15612568-15613005
Length = 145
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 126 ERLRRRRWRWRWRG 139
>04_01_0225 + 2836634-2837086
Length = 150
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 246 KKLRRSRWLWAWRG 287
++LRR RW W WRG
Sbjct: 131 ERLRRRRWRWRWRG 144
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 239 LYKEVATIALALGVERTKSELIPFLTETIYDEDEVLLAL-AEQLGSFINLVGGGEFAHCL 415
L +++ + G +T L+P L + D DE L A+ Q+ +G L
Sbjct: 726 LLQDIGYLCYFFGHRQTNDFLLPILPAFLNDRDEQLRAVYFGQIVVVCYFIGSRSVEEYL 785
Query: 416 LPPLETLAAVEETVVRDKAVASL 484
LP LE + E VV K + L
Sbjct: 786 LPYLEQALSDEMEVVLVKVLDCL 808
>05_06_0070 + 25342965-25343882,25343968-25344618
Length = 522
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 329 DEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETL---AAVEETVVRDKAVAS 481
DED V + EQLG L + A L PP+ L A+E+TV+ VA+
Sbjct: 353 DEDTVAVVREEQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAA 406
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 407 HCLLPP-LETLAAVEETVVRDKAVASLRAVAEHHSRKHSRNTL 532
HC + L+ +A+E + +AS RA AE H+ S++ L
Sbjct: 776 HCRMETILQEWSAIETNEQHEAEIASSRATAEEHASNSSKDLL 818
>06_01_0896 - 6889754-6890236
Length = 160
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/80 (33%), Positives = 34/80 (42%)
Frame = +3
Query: 489 PLPSTTAASTRGTLCATSTAPCWRRLVHFKNICLWTI*CMLPTCLGTCEGRTSSAFPLPL 668
PLPST ++ST L A ++ V IC + C GR +A PLP
Sbjct: 35 PLPSTPSSST---LSAAGSSGATAAAV-IDLICAGELGSRRRRCCPR-RGRLRAAPPLPR 89
Query: 669 SR*YSDGTPRCCLQTWRVCE 728
S + RCCL WR E
Sbjct: 90 S---GEEGHRCCLWRWRRVE 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,021
Number of Sequences: 37544
Number of extensions: 403332
Number of successful extensions: 1455
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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