Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00907
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)             116   2e-26
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  36   0.036
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          31   1.4  
SB_43725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)
          Length = 405

 Score =  116 bits (280), Expect = 2e-26
 Identities = 56/86 (65%), Positives = 67/86 (77%)
 Frame = +1

Query: 511 QALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMV 690
           Q LE HFVPL++RL+ GDWFT RTSACGLFSVCYPR++A +KAELR  FR+LC DDTPM 
Sbjct: 41  QDLENHFVPLLKRLSQGDWFTLRTSACGLFSVCYPRINANMKAELRVQFRNLCNDDTPM- 99

Query: 691 RRAAAYKLGEFAKVVEIEYVKSDLFP 768
                    EFAKV+E+E+VKS+L P
Sbjct: 100 ---------EFAKVMELEFVKSELVP 116



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +3

Query: 144 MAASDSGTDESLYPIAVLIDELKNEDVQ 227
           MA+SD   D+SLYPIAVLIDEL+NEDVQ
Sbjct: 1   MASSDG--DDSLYPIAVLIDELRNEDVQ 26


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDED-EVLLALAEQLGSFINLVGGGEF 403
           +E+ +IA ALG E TK+ +IP L E   DE+  V L+  E + + +NL+    F
Sbjct: 21  QELESIARALGTETTKTSVIPELVELTNDEETSVRLSGMETITNLLNLLDDVNF 74


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 153 SDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLRRSR 266
           SD  TDE L   AV  D L +++++      KK+R+SR
Sbjct: 348 SDKWTDERLKKTAVFGDSLNDKEIKYFYERFKKIRQSR 385


>SB_43725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 480 HSVPLPS--TTAASTRGTLCATSTAPCWRRLVHFKNI 584
           HS P+    T+   ++ +L ++S   CWR +VH+ ++
Sbjct: 136 HSPPISDHFTSFVPSKPSLISSSVIRCWRHVVHYLHV 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,339,723
Number of Sequences: 59808
Number of extensions: 437880
Number of successful extensions: 1335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)