Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00907
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   131   6e-31
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    33   0.17 
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    33   0.17 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   4.8  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   6.4  
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    28   8.5  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  131 bits (316), Expect = 6e-31
 Identities = 64/88 (72%), Positives = 75/88 (85%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
           ++++TIALALGVERT++ELI FLT+TIYDEDEVLL LAEQLG+F  LVGG +  HCLL P
Sbjct: 35  RKLSTIALALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLP 94

Query: 425 LETLAAVEETVVRDKAVASLRAVAEHHS 508
           LE LA VEETVVRDKAV SLR +A+ HS
Sbjct: 95  LENLATVEETVVRDKAVESLRKIADKHS 122



 Score =  128 bits (308), Expect = 6e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +1

Query: 514 ALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVR 693
           +LEEHFVP+++RLA GDWFTSRTSACGLFSV YPRVS  +K+EL+  FR+LC+DDTPMVR
Sbjct: 125 SLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDTPMVR 184

Query: 694 RAAAYKLGEFAKVVE 738
           RAAA KLGEFAKV E
Sbjct: 185 RAAAAKLGEFAKVFE 199



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 144 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKL 254
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI+KL
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKL 37


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 735 HNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRC 625
           HN + L   VG   AYH +IIL E  E   +FC+  C
Sbjct: 320 HNIQALL-LVGGFEAYHSTIILAENREKYPEFCIPMC 355


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 735 HNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRC 625
           HN + L   VG   AYH +IIL E  E   +FC+  C
Sbjct: 523 HNIQALL-LVGGFEAYHSTIILAENREKYPEFCIPMC 558


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 560  PPARRCTSGTKCSSSACGC 504
            P  +RC+ G+ CS+S C C
Sbjct: 1853 PCMQRCSGGSSCSNSICSC 1871


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 753  LNIFNLHNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRCRDTWVAYTK 598
            L+ FN H  R + K + S  + HR ++L E    L   CLH      V  T+
Sbjct: 1454 LSTFNAH--RPIKKLINSYES-HRMLLLLENCAQLPILCLHNTPAVGVEATR 1502


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +2

Query: 377 INLVGGGEFAHCLLPPLETLAAVEETVV-RDKAVASLRAVAEHHSRKHSRNTLCH*YSAL 553
           +N +G  EF  C+LPP+E     +  V+   + V  +  +A + + K     LC    ++
Sbjct: 196 VNGMGAAEFLSCVLPPMEKSGGGQIVVLSSSQGVRPIPMLAAYCATKALMTFLC---ESI 252

Query: 554 LEETGSLQEHLLVDYLVYATHVSRHL*RQNFV 649
             E  ++    L+  LV AT ++ +     FV
Sbjct: 253 DREYSTINVQTLIPALV-ATKMTYYTKGSTFV 283


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 548 RCTSGTKCSSSACGCGARQR 489
           +CTSG +C    C CG + R
Sbjct: 189 QCTSGAECVGQMCACGKKFR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,419
Number of Sequences: 27780
Number of extensions: 328483
Number of successful extensions: 1120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)