Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00907
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A...   108   5e-24
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A...   107   6e-24
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...   104   6e-23
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    32   0.36 

>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
           (PP2A) 65 KDa regulatory subunit A identical to protein
           phosphatase 2A 65 kDa regulatory subunit (pDF1)
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score =  108 bits (259), Expect = 5e-24
 Identities = 54/80 (67%), Positives = 65/80 (81%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
           + ++TIA ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG E+AH LLPP
Sbjct: 31  RRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEYAHVLLPP 90

Query: 425 LETLAAVEETVVRDKAVASL 484
           LETL+ VEET VR+KAV SL
Sbjct: 91  LETLSTVEETCVREKAVESL 110



 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
 Frame = +1

Query: 487 CRCRAPQPQA-LEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRS 663
           CR  +   ++ L +HF+ LV+RLA G+WFT+R SACG+F + YP     +K ELR  +  
Sbjct: 111 CRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQ 170

Query: 664 LCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDL 762
           LCQDD PMVRRAAA  LG+FA  VE  ++K+D+
Sbjct: 171 LCQDDMPMVRRAAATNLGKFAATVESAHLKTDV 203



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = +3

Query: 168 DESLYPIAVLIDELKNEDVQLRLNSIKKL 254
           DE LYPIAVLIDELKN+D+QLRLNSI++L
Sbjct: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRL 33


>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit A (RCN1) identical to
           phosphoprotein phosphatase 2A, regulatory subunit A
           GI:1262171 from [Arabidopsis thaliana]
          Length = 588

 Score =  107 bits (258), Expect = 6e-24
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
           + ++TIA ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG EFAH LLPP
Sbjct: 31  RRLSTIARALGEERTRKELIPFLSENSDDDDEVLLAMAEELGVFIPFVGGIEFAHVLLPP 90

Query: 425 LETLAAVEETVVRDKAVASL 484
           LE+L  VEET VR+KAV SL
Sbjct: 91  LESLCTVEETCVREKAVESL 110



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 44/82 (53%), Positives = 58/82 (70%)
 Frame = +1

Query: 517 LEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVRR 696
           L E FVPLV+RLAGG+WF +R SACG+F V Y   +  +K ELR  +  LC+DD PMVRR
Sbjct: 122 LVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVRR 181

Query: 697 AAAYKLGEFAKVVEIEYVKSDL 762
           AAA  LG+FA  VE  ++ +++
Sbjct: 182 AAASNLGKFATTVESTFLIAEI 203



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = +3

Query: 168 DESLYPIAVLIDELKNEDVQLRLNSIKKL 254
           DE LYPIAVLIDELKN+D+QLRLNSI++L
Sbjct: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRL 33


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score =  104 bits (250), Expect = 6e-23
 Identities = 53/80 (66%), Positives = 64/80 (80%)
 Frame = +2

Query: 245 KEVATIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPP 424
           K ++ IA ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG E+A+ LLPP
Sbjct: 31  KRLSIIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGGFILYVGGVEYAYVLLPP 90

Query: 425 LETLAAVEETVVRDKAVASL 484
           LETL+ VEET VR+KAV SL
Sbjct: 91  LETLSTVEETCVREKAVDSL 110



 Score =  104 bits (249), Expect = 7e-23
 Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
 Frame = +1

Query: 487 CRCRAPQPQA-LEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRS 663
           CR  A   ++ L EHF PL +RL+ G+WFT+R SACG+F + YP     +K ELR  +  
Sbjct: 111 CRIGAQMRESDLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQ 170

Query: 664 LCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDL 762
           LCQDD PMVRRAAA  LG+FA  +E  ++K+D+
Sbjct: 171 LCQDDMPMVRRAAATNLGKFAATIESAHLKTDI 203



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +3

Query: 159 SGTDESLYPIAVLIDELKNEDVQLRLNSIKKL 254
           S  DE LYPIAVLIDELKN+D+Q RLNSIK+L
Sbjct: 2   SMVDEPLYPIAVLIDELKNDDIQRRLNSIKRL 33


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 6    ATPLSKLSFIKILQRTRFDK---FYTKKLSLKLSAYTLN*NQDKAQ*IKMAASDSGTDES 176
            A  +S L  +  L+ +R+ +   F+ K LS+KLS+ T   N D++Q I    S+   D  
Sbjct: 2392 ARSVSMLHDLGDLEASRYGRRLLFHIKTLSIKLSSKTGEANHDESQNIMSITSEDSFDGE 2451

Query: 177  LYP 185
             YP
Sbjct: 2452 TYP 2454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,867
Number of Sequences: 28952
Number of extensions: 302792
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)