Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00906
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O61697 Cluster: Putative beta-ureidopropionase; n=1; Ma...    44   0.003
UniRef50_Q116Y1 Cluster: Response regulator receiver sensor sign...    38   0.29 
UniRef50_Q1DN86 Cluster: Putative uncharacterized protein; n=3; ...    36   0.68 
UniRef50_Q6NP10 Cluster: LD13390p; n=7; Eukaryota|Rep: LD13390p ...    35   2.1  
UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, wh...    33   6.3  
UniRef50_Q1DQI4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_O61697 Cluster: Putative beta-ureidopropionase; n=1;
           Manduca sexta|Rep: Putative beta-ureidopropionase -
           Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 185

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
 Frame = +3

Query: 519 ELTSLDEVISNSLKGKELEEFNRIHYGRID--QCALFISSVAAQKAASNGFEI 671
           E  SL+ +I N+L G++L+EFNRI+YGR +  +  L  SS+AA K A   FE+
Sbjct: 3   ETQSLEAIIENNLSGRDLDEFNRIYYGRKNHLEVKLKDSSLAAAKEAD--FEV 53


>UniRef50_Q116Y1 Cluster: Response regulator receiver sensor signal
           transduction histidine kinase; n=1; Trichodesmium
           erythraeum IMS101|Rep: Response regulator receiver
           sensor signal transduction histidine kinase -
           Trichodesmium erythraeum (strain IMS101)
          Length = 433

 Score = 37.5 bits (83), Expect = 0.29
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +2

Query: 128 LVIAILTNLRKIFLTRPISHLSSLDSFEIKIEVAVQISNHIHLLQLLSTLHSADVPKIVQ 307
           +++A+ +N++ I     +  +  +      IEV  ++ NHIHL QL   L      K  +
Sbjct: 85  ILMAVPSNIKNIVKGLTLGAVDYITIPFQTIEVLSKVKNHIHLQQLKKNLEKEVAKKTYE 144

Query: 308 TSYSIE*LKRYTVLPLSSKYLL 373
            + ++E LK   V P+ S+ +L
Sbjct: 145 LTQALEQLKASQVKPIKSEEML 166


>UniRef50_Q1DN86 Cluster: Putative uncharacterized protein; n=3;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 369

 Score = 36.3 bits (80), Expect = 0.68
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 132 LSQYLRI*GRFF*PDQFHILVHWIRLKSKSKWQCKFQTTFIFFNY 266
           LSQ +R    +F     H + +WIR+K + KW+  F T F  F Y
Sbjct: 161 LSQLVR--AHYFSKVDLHNIYYWIRIKEEDKWKTTFHTKFGSFEY 203


>UniRef50_Q6NP10 Cluster: LD13390p; n=7; Eukaryota|Rep: LD13390p -
           Drosophila melanogaster (Fruit fly)
          Length = 408

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507 KASA-ELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIK 674
           K SA EL +L++ +   L   EL+E  RI YG  +   L + + A   A  NGF+IK
Sbjct: 22  KMSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIK 78


>UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 507

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 174 DQFHILVHWIRLKSKSKWQCKFQTTFIFFNYFQHYIVQMYLK 299
           ++F ++  +I L   SK    +Q   + F YF HYI+Q  LK
Sbjct: 339 EKFILISKFITLYQLSKEAKHYQMLHVVFTYFNHYIIQSILK 380


>UniRef50_Q1DQI4 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 221

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 162 FF*PDQFHILVHWIRLKSKSKWQCKFQTTFIFFNY 266
           +F     H + +WIR+K + +W+  F T F  F Y
Sbjct: 145 YFFKIDLHDIYYWIRIKEEDEWKITFYTKFESFEY 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,529,825
Number of Sequences: 1657284
Number of extensions: 9426816
Number of successful extensions: 20334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20332
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)