Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00906
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   1.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.7  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   7.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   10.0 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   10.0 

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 DSFEIKIEVAVQISNHIHLLQLLSTLHSADVPKIV 304
           DS++ K E  V +SN + ++  L  LH A  P ++
Sbjct: 12  DSYDFKHEGKVHLSNFLPIINDLQLLHPASAPPLL 46


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 540 VISNSLKGKELEEFNRIHYGR 602
           V+ N+L  K LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 128 LVIAILTNLRKIFLTRPISHLSSLDSFEIKIEVAVQISNHIHLLQ 262
           L +AIL    +IF++RP+    S+       E ++Q ++H+ + Q
Sbjct: 176 LAVAILLEAIRIFISRPVPLTHSIVFLFNDAEESLQDASHMFITQ 220


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 191 SSLDSFEIKIEVAVQISNHIHLLQLLSTLHSA 286
           SS D+F   + +A  +  H HLL  +  LH A
Sbjct: 156 SSNDTFPTVMHIASVLQIHTHLLPAMKHLHRA 187


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 125 YLVIAILTNLRKIFLTRPISHLSSLDSFEIKIEVAVQI 238
           Y V A+L +    FL RP+ HLS    F ++I + +Q+
Sbjct: 722 YFVFALLYSFLS-FLQRPLGHLSLFSCF-LQILLLIQL 757


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 661 PLLAAFWAATELINKAHW 608
           P+ +A W++ EL++K +W
Sbjct: 319 PISSALWSSKELLSKDYW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,333
Number of Sequences: 5004
Number of extensions: 46173
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)