Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00906
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011121-1|AAR82788.1|  408|Drosophila melanogaster LD13390p pro...    35   0.12 
AF333187-1|AAK60520.1|  386|Drosophila melanogaster beta-alanine...    34   0.15 
AE014297-636|AAF54141.2|  386|Drosophila melanogaster CG3027-PA ...    34   0.15 

>BT011121-1|AAR82788.1|  408|Drosophila melanogaster LD13390p
           protein.
          Length = 408

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507 KASA-ELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIK 674
           K SA EL +L++ +   L   EL+E  RI YG  +   L + + A   A  NGF+IK
Sbjct: 22  KMSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIK 78


>AF333187-1|AAK60520.1|  386|Drosophila melanogaster beta-alanine
           synthase protein.
          Length = 386

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 519 ELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIK 674
           EL +L++ +   L   EL+E  RI YG  +   L + + A   A  NGF+IK
Sbjct: 5   ELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIK 56


>AE014297-636|AAF54141.2|  386|Drosophila melanogaster CG3027-PA
           protein.
          Length = 386

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 519 ELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIK 674
           EL +L++ +   L   EL+E  RI YG  +   L + + A   A  NGF+IK
Sbjct: 5   ELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIK 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,121,884
Number of Sequences: 53049
Number of extensions: 420330
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)