Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00906
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    28   5.3  
Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   9.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   9.2  

>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 201 IRLKSKSKWQCKFQTTFIFFNYFQHY 278
           +  + KSKW   F + F+FF YF+ +
Sbjct: 76  VSTEKKSKWTLVFGSAFLFFWYFETF 101


>Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical
           protein C48B4.11 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 231 CKFQTTFIFFNYFQHYIVQMYLK*CRQVTLSNN*NAIQCYPYLVNIFYILCTGLVHNYRE 410
           C FQ  FIF  +F+  +V +Y+  C+   L       Q   Y V IF +  T + + +  
Sbjct: 34  CPFQQLFIFLAFFEFAVVALYV--CKSRFLQVLHFQYQSVAYCVPIF-LFVTSIYYEFYP 90

Query: 411 LKT 419
            +T
Sbjct: 91  KET 93


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 587 NSLWKNRPMCFVYQFRCCPKSR 652
           +S  +N   CF YQFRC  K++
Sbjct: 173 DSCSRNHTACFQYQFRCADKTQ 194


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 587 NSLWKNRPMCFVYQFRCCPKSR 652
           +S  +N   CF YQFRC  K++
Sbjct: 173 DSCSRNHTACFQYQFRCADKTQ 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,329
Number of Sequences: 27780
Number of extensions: 243238
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)