Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00906
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138...    28   5.0  
At3g55510.1 68416.m06164 expressed protein                             28   6.6  
At1g73340.1 68414.m08489 cytochrome P450 family protein similar ...    28   6.6  

>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as '
           auxin-independent growth promoter -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 213 ISNESNELRCEIGRVKKIFLKFVSIAITKYLFKVSNK 103
           +  + NE RC I RV  + LK  ++ + K+ +++SNK
Sbjct: 194 VPRKCNE-RCYINRVLPVLLKRHAVQLNKFDYRLSNK 229


>At3g55510.1 68416.m06164 expressed protein
          Length = 594

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 507 KASAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCA-LFISSVAA 641
           KAS  +T L +++  +L  K  E   +IH G    C  L+++ ++A
Sbjct: 336 KASVSITQLAKLLKMALATKNKEAVEKIHSGEYINCVDLWVNFISA 381


>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 512

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 498 LQRKASAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALF 623
           ++++    ++ L  V+   LK  +   FN I YGRI  C+LF
Sbjct: 72  VEKQIKKFVSLLCSVLLLILKRPDNSGFNEIRYGRIFSCSLF 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,749
Number of Sequences: 28952
Number of extensions: 211536
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)