Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00905
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    27   2.1  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.5  

>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 467 SHALARVCRDDIESTADIIYLILLRTARARQHTHKT 574
           +H L   C DDIE   D I  ILL    ARQ   +T
Sbjct: 105 AHLLLNFCADDIEDVED-IRRILLDIREARQSKART 139


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 452 IVYPISHALARVCRDDIESTADIIYLILLRTARARQHTHKTIRALQNTITDTEIT 616
           + + I  +L+ +   DI S   ++     + A+  QH+   + +LQN++ +T +T
Sbjct: 84  LTFQIKQSLSSL-NSDIASLQQVVKGNRNKPAQMNQHSENVVVSLQNSLANTSMT 137


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 398 FIYLYIYTHAYIRSFLIFIVYPISHALARV 487
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,774
Number of Sequences: 5004
Number of extensions: 50222
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)