Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00905
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.1  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 494 RDKRAREREKSDKR*KLRTIECMHAYIYINK*IKYLHITHNTTHV 360
           RD+R RER K  K     +  C ++  Y N    Y  + +N  ++
Sbjct: 290 RDRRERERSKEPKIISSLSNSCNYSNNYYNN-NNYKKLYYNINYI 333


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 41  ESACSPWPRGPGNPLKLLRA 100
           + + SP PR P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 494 RDKRAREREKSDK 456
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 494 RDKRAREREKSDK 456
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,074
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)