Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00904
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958...    31   0.84 
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611...    29   4.5  
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675...    28   7.8  
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545...    28   7.8  

>03_02_0844 +
           11695159-11695263,11695402-11695463,11695789-11695876,
           11695958-11696019,11696250-11696346,11696592-11696984,
           11697072-11697611,11697856-11697966,11698102-11698242,
           11698290-11698394,11698480-11698557,11699346-11699472,
           11699580-11699625,11699709-11699754
          Length = 666

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 528 FSHSADVAMIITVDLLNERMAHQQPQTKTD 439
           F+  +DVA I   DLLNE +A QQP T  D
Sbjct: 313 FTAFSDVANIAQKDLLNEPVAQQQPVTGLD 342


>04_03_0807 -
           19860041-19860132,19860248-19860347,19861101-19861170,
           19861344-19861407,19862531-19862704,19862805-19862946,
           19863413-19863544,19863616-19863705,19864093-19864152,
           19864227-19864343,19864441-19864611,19866909-19866984,
           19867156-19867223
          Length = 451

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 487 INGDNHCYVCRMTKTF--VVTQFSAHMARHLKV 579
           +NG  HC+ C  T TF  V+ Q SA   R + V
Sbjct: 396 VNGRRHCHTCLSTSTFLEVLEQLSAPGVRRVVV 428


>03_02_0244 +
           6750973-6751041,6751216-6751258,6751349-6751410,
           6751779-6751875,6752380-6752450,6752503-6752586,
           6753040-6753294
          Length = 226

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 486 LLNERMAHQQPQTKTDSERV*PLSASLLKELLNRIFE 376
           L  E + H QP T+ D     PLS      +++R FE
Sbjct: 142 LAGETVKHNQPHTEVDFRAFQPLSRESFTHVMDRNFE 178


>01_03_0243 +
           14154122-14154190,14154373-14154415,14154491-14154552,
           14155214-14155310,14157663-14157733,14158338-14158694
          Length = 232

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 534 KCFSHSADVAMIITVDLLNERMAHQQPQTKTDSERV*PLS 415
           +CF +  ++ ++   +   E + H QP T+ D     P+S
Sbjct: 98  RCFKNVCELHIVFNFNKAGETVKHNQPHTEVDFRAFQPMS 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,716
Number of Sequences: 37544
Number of extensions: 314256
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)