Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00904
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    31   0.99 

>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 231 NRWRCFNFFNTSTIYHFYSKFAMLLLIIRIDCKLISERYA*NKKKSDITQKSYLIVPSVV 410
           + W CF  F+    +H YS F +L+L     C ++ ERY   K K  I     +  PS +
Sbjct: 83  SEWSCFLGFSLQLHFHSYS-FHLLILCFIFRCYVLLERYP--KAKQLIILICIIYFPSYL 139

Query: 411 MLI 419
             I
Sbjct: 140 QAI 142


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 579 HFEMSRHMGTELGNYKCFSHSADVAMIITVDLLNERMAHQQPQTKTDSERV*PLSASLLK 400
           +F  + H   ++G  K +S   D+ +     + +E    + P+ KTD E +   SAS +K
Sbjct: 560 NFAFAAHSFYQIGQIKKYSADLDLLIKKIPSVPDEIKKIKNPKVKTDLEMIWKNSASFVK 619

Query: 399 ELLN 388
            L+N
Sbjct: 620 FLIN 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,639
Number of Sequences: 27780
Number of extensions: 295266
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)