Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00904
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45680.1 68416.m04937 proton-dependent oligopeptide transport...    31   0.92 
At4g21350.1 68417.m03084 U-box domain-containing protein similar...    30   1.2  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    29   2.1  
At3g45710.1 68416.m04940 proton-dependent oligopeptide transport...    29   2.8  
At3g45700.1 68416.m04939 proton-dependent oligopeptide transport...    29   2.8  
At3g45660.1 68416.m04933 proton-dependent oligopeptide transport...    29   2.8  
At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2...    29   3.7  
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ...    28   6.5  

>At3g45680.1 68416.m04937 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 239 PPIVHLKLTSLFNRHITISLCNSA--HSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQ 75
           PP+V + +   F     I L       SL+NTAT L  V    +FY++T  IDLI++
Sbjct: 444 PPLVIVGIGEAFQFPANIELFYGEFPESLRNTATSLTSVVIGISFYLSTALIDLIQR 500


>At4g21350.1 68417.m03084 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 374

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 268 QYTIFILNSLCCC 306
           QY++FILN LCCC
Sbjct: 316 QYSLFILNCLCCC 328


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 239 PPIVHLKLTSLFNRHITISLCNSA--HSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQ 75
           PP+V + +   F+    ++LC      S+++TAT +  V     FY +T  IDLI++
Sbjct: 445 PPLVIVGIGEAFHFPGNVALCYQEFPESMRSTATSITSVVIGICFYTSTALIDLIQR 501


>At3g45710.1 68416.m04940 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 560

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 206 FNRHITISLCNSAHSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQ 75
           F  ++ +       SLKNTAT L  V    +FY++T  ID+I++
Sbjct: 459 FPANVAVFYGEFPESLKNTATSLTSVVIGISFYLSTAVIDVIQR 502


>At3g45700.1 68416.m04939 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 548

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 206 FNRHITISLCNSAHSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQ 75
           F  +I I       SL+NTAT L  V    +FY++T  ID+I++
Sbjct: 447 FPANIAIFYGEFPESLRNTATSLTSVVMGISFYLSTALIDVIQR 490


>At3g45660.1 68416.m04933 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 557

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 239 PPIVHLKLTSLFNRHITISLCNSA--HSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQ 75
           PP+V + +   F+    ++LC      S+++TAT +  V     FY +T  IDLI++
Sbjct: 444 PPLVIVGIGEAFHFPGNVALCYQEFPESMRSTATSITSVLIGICFYTSTALIDLIQK 500


>At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2.6)
           plant glutamate receptor family, PMID:11379626
          Length = 906

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -3

Query: 564 RHMGTELGNYKCFSHSADVAMIITVDLLNERMAHQQPQTKTDSER 430
           R  G EL N++C+ +    A+ ++++ ++  +     QTK ++ R
Sbjct: 304 RFGGEELNNFECWGYDTATALAMSIEEISSNVNMSFSQTKRNTSR 348


>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 551

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 275 VYCACIEKIKTAPPIVHLKLTSLFNRHITISLCNS 171
           V+  C+E I  + P  HL LT  + +    S+C S
Sbjct: 55  VHKDCLEIINPSNPTYHLSLTDRYGKLFRCSICTS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,967
Number of Sequences: 28952
Number of extensions: 264645
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)