Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00903
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    70   4e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    69   6e-13
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.7  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   5.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   9.1  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 34/69 (49%), Positives = 42/69 (60%)
 Frame = +1

Query: 547 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYF 726
           + KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +F
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFF 218

Query: 727 TNTVLTKEY 753
           TN +LTK Y
Sbjct: 219 TNKILTKTY 227



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 227 SDGIPT-PECC-RRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 400
           S+G+   PE   RRI  LR LQK + D+E++F  E+                 R+ +V G
Sbjct: 65  SEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRG 124

Query: 401 TYEPNDDECLNPWRDDTEEEE 463
             EP ++E       D  E++
Sbjct: 125 ADEPTEEEIKKGEAADENEKK 145


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +1

Query: 544 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 720
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 721 YFTNTVLTKEYLMK 762
           YFTN +LTK Y  K
Sbjct: 221 YFTNKILTKTYYYK 234


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 211 IAFMQKRWHPYPRMLSANPRLENSSEGVC 297
           IA    R HPY R  S  P+ +   +G+C
Sbjct: 667 IARRSNRHHPYSRPSSTRPQCQLEDQGIC 695


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 767 LAFIKYSLVSTVFVKYSFG 711
           LAFI  SLV+T++V Y FG
Sbjct: 491 LAFISLSLVATIYVIYFFG 509


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 85  ERSTVPIFNISLSPPSKFSEKKDG 14
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 SGHHKSPSCRSDGIPTPECCRRIRALRTLQKEFVDIEAKF 316
           + +HK  S  +  +PTPE C+     R +Q  F ++ +KF
Sbjct: 195 TSYHKHNSLDALPLPTPEFCQICE--REIQSWFFELHSKF 232


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 159  HLLKSGVTRNEMIAAITNRLHAEAMASLP 245
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 525 YRASNGSQCKGYPRLLVQHIQEC 593
           YR SNG   + Y  L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,700
Number of Sequences: 5004
Number of extensions: 60399
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)