Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00903
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 79 3e-15
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 78 9e-15
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 74 1e-13
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 71 1e-12
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 60 3e-09
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 51 1e-06
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.4
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 7.2
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 28 7.2
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 28 9.5
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/73 (49%), Positives = 47/73 (64%)
Frame = +1
Query: 541 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 720
D + KG+PDFW + +LSE +QE DEP LK L+DIK +DP F L+F+F N
Sbjct: 128 DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNP 187
Query: 721 YFTNTVLTKEYLM 759
+F N+VLTK Y M
Sbjct: 188 FFKNSVLTKTYHM 200
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 77.8 bits (183), Expect = 9e-15
Identities = 37/76 (48%), Positives = 46/76 (60%)
Frame = +1
Query: 532 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFA 711
P KG+P+FW N +N +LSE +QE DE LK L+DIK +P F LEFYF
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFD 181
Query: 712 PNEYFTNTVLTKEYLM 759
N +F N+VLTK Y M
Sbjct: 182 TNPFFKNSVLTKTYHM 197
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 245 PECCRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 409
P+ +R+ LR +Q + D+EAKF+ E A R IVNG E
Sbjct: 55 PKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVNGVVE 109
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/75 (46%), Positives = 45/75 (60%)
Frame = +1
Query: 535 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAP 714
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F EF+F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261
Query: 715 NEYFTNTVLTKEYLM 759
N +F N VLTK Y M
Sbjct: 262 NPFFKNQVLTKTYHM 276
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1
Query: 553 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 732
KG+PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 733 TVLTKEYLM 759
VLTK Y M
Sbjct: 163 QVLTKTYHM 171
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +1
Query: 550 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 726
+K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 727 TNTVLTKEY 753
+T LTK Y
Sbjct: 132 EDTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 550 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 726
++ IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
Query: 727 TNTVLTKEY 753
+ LTK Y
Sbjct: 137 EDKELTKTY 145
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 383 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 505
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 240 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 109
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 428 LNPWRDDTEEEELARAVQNAAITEGEERRMTRLSS 532
LN W D +EEL +++++T G R ++R +S
Sbjct: 729 LNSWIDILGKEELPEVAKDSSVTSGRSRVLSRDAS 763
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 448 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 296
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,260,438
Number of Sequences: 37544
Number of extensions: 391832
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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