Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00903
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 32 0.45
SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 4.2
SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 7.3
SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 9.6
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 9.6
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 90.2 bits (214), Expect = 2e-18
Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 12/87 (13%)
Frame = +1
Query: 547 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV------------QMHEDPISF 690
+ KGIP+FW +NV +LSEM+QEHDEPILK L D++V P+ F
Sbjct: 236 DTKGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGF 295
Query: 691 TLEFYFAPNEYFTNTVLTKEYLMKASP 771
LEF+F PN +FTNTVLTK Y MK P
Sbjct: 296 VLEFHFTPNPFFTNTVLTKSYKMKCEP 322
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/82 (31%), Positives = 33/82 (40%)
Frame = +2
Query: 254 CRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLN 433
CR + E +E KFY EVHA R I +G EP D+EC
Sbjct: 129 CRLYAGVSYTLVECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC-- 186
Query: 434 PWRDDTEEEELARAVQNAAITE 499
W D E+E+ A + TE
Sbjct: 187 RWPSDAEDEDEAEEKEEKEATE 208
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 264 IRRQHSG-VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 145
+R Q SG V +PS +HE D PL F +GS + T + L H
Sbjct: 199 VRTQASGPVPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 437 WRDDTEEEELARAVQNAAITEGEERR-MTRLSSL 535
W+++ EE+E R + TEGEE M RLS L
Sbjct: 103 WKEEEEEDEAERESMDNTNTEGEEEEGMERLSDL 136
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 526 IEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 630
I+PP+ P K +PD ++ R + LS + EH+E
Sbjct: 158 IKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192
>SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +1
Query: 535 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV---QMHEDPISFTLEF- 702
P DP+ K I W N+F M + +++ + +CL + + Q H +P + + +
Sbjct: 110 PSDPSAKMILQPWRNVFSKGFMDAFVLRSIFPKLSQCLAEFVINPHQQHLEPFHWVMSWK 169
Query: 703 YFAPNEYFTNTVLTKEYLMKAS 768
P ++F ++L K + K S
Sbjct: 170 EIIPLQHFV-SLLDKHFFPKWS 190
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 401 TYEPNDDECLNPWRDDTEEEEL 466
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 247 RMLSANPRLENSSEGVCRH*GQV 315
+MLSAN LENS+ VC G++
Sbjct: 230 KMLSANTTLENSTTSVCASFGEI 252
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 404 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 499
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 463 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 323
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,449,740
Number of Sequences: 59808
Number of extensions: 475360
Number of successful extensions: 1027
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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