Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00903
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of... 60 2e-09
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 4.9
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 28 6.4
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 83.4 bits (197), Expect = 2e-16
Identities = 36/77 (46%), Positives = 47/77 (61%)
Frame = +1
Query: 541 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 720
DP+ KGI DFW R +++E ++EHD PIL L D+ +DP F +EF+FA N
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNP 166
Query: 721 YFTNTVLTKEYLMKASP 771
YF N VLTK YL+ P
Sbjct: 167 YFKNQVLTKTYLLGFDP 183
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 257 RRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNP 436
+R+ AL+ LQ + + IE+ FY VH R IV G EP ++ P
Sbjct: 28 QRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTP 87
Query: 437 WRDDTEEEELARAVQNA 487
+ E ++LA + A
Sbjct: 88 ILEGLEGDQLAELYKAA 104
>Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical
protein C27B7.1b protein.
Length = 313
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 559 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 735
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 736 VLTKEY-LMKASP 771
V+TK Y L SP
Sbjct: 137 VITKSYHLQSESP 149
>Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical
protein C27B7.1a protein.
Length = 312
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 559 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 735
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 736 VLTKEY-LMKASP 771
V+TK Y L SP
Sbjct: 137 VITKSYHLQSESP 149
>AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of
presenilin 2 protein.
Length = 312
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 559 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 735
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 736 VLTKEY-LMKASP 771
V+TK Y L SP
Sbjct: 137 VITKSYHLQSESP 149
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 770 GLAFIKYSLVSTVFVKYSFGAK*NSRVKLMGSSC 669
GLAF+ +L+ TVF++Y++ A V+ M ++C
Sbjct: 361 GLAFLIVNLIGTVFIEYTWDACYLCAVESMETAC 394
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 770 GLAFIKYSLVSTVFVKYSFGAK*NSRVKLMGSSC 669
GLAF+ +L+ TVF++Y++ A V+ M ++C
Sbjct: 361 GLAFLIVNLIGTVFIEYTWDACYLCAVESMETAC 394
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 460 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 290
+ F +I P V T++++ F + + LFI V+ I FA C + LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706
Query: 289 LLKS 278
LL S
Sbjct: 707 LLAS 710
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 580 IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 687
IF V + + + + P+L L ++V H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 337 ECMYFTVKLGLNVDKLLLKSSQGADSPT 254
EC++ + K GLNVDK+L +PT
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPT 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,731
Number of Sequences: 27780
Number of extensions: 346147
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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