Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00903
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    74   1e-13
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    73   2e-13
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    69   3e-12
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    56   3e-08
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    51   1e-06
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil...    47   2e-05
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    29   2.6  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/69 (50%), Positives = 43/69 (62%)
 Frame = +1

Query: 553 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 732
           KG+P FW    +N  ++SE + E DE  LK L+DIK    E+P  F LEF+F  N YF N
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKN 184

Query: 733 TVLTKEYLM 759
           TVLTK Y M
Sbjct: 185 TVLTKSYHM 193



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 242 TPECCRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE---- 409
           TP   +R+ ALR +Q +  ++EAKF  E                  R  IVNGT E    
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107

Query: 410 PNDDECLNPWRDDTEEEE 463
           P DD  ++   + T EE+
Sbjct: 108 PEDDTKVDQGEEKTAEEK 125


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/69 (50%), Positives = 43/69 (62%)
 Frame = +1

Query: 553 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 732
           KG+PDFW    +N  + +E + E DE  LK L+DIK    E+P  F LEF+F  N YF N
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKN 183

Query: 733 TVLTKEYLM 759
           TVLTK Y M
Sbjct: 184 TVLTKTYHM 192


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 33/69 (47%), Positives = 42/69 (60%)
 Frame = +1

Query: 553 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 732
           KG+P FW    +N  ++SE + E DE  L  L+DIK    E+P  F LEF+F  N YF N
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKN 183

Query: 733 TVLTKEYLM 759
           T+LTK Y M
Sbjct: 184 TLLTKAYHM 192



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
 Frame = +2

Query: 242 TPECCRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPN-- 415
           TP+  RR+  LR +Q +  +IE KF  E  A               R  IVNG  E    
Sbjct: 48  TPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATEVEGA 107

Query: 416 -DDECLNPWRDDTEEEE-----LARAVQN-----AAITEGEERRMTRLSSLQW 541
            +D  ++   + T EE+        A++N       ITE +E  +  L  ++W
Sbjct: 108 PEDAKMDQGDEKTAEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKW 160


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +1

Query: 553 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFT 729
           +G+P+FW    +   ML+  + E DE  LK L+DI+    ED   +F LEF F  N YF 
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185

Query: 730 NTVLTKEY 753
           N+VL+K Y
Sbjct: 186 NSVLSKTY 193


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 550 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 726
           +K IPDFW   F +   L E++ E D+ I K L  + V+  +D  S +++ F F PN +F
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFF 129

Query: 727 TNTVLTKEY 753
            +  LTK +
Sbjct: 130 EDGKLTKTF 138


>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105 SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
           PF00956 nucleosome assembly protein (NAP)
          Length = 256

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 550 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 726
           ++ IP FW   F +   L +++ E D+ I K L  ++V+  +D  S +++ F+F  N +F
Sbjct: 74  IQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFF 133

Query: 727 TNTVLTKEY 753
            +  LTK +
Sbjct: 134 EDAKLTKTF 142


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 386 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEERR 514
           ++  G     +DE L PW  + EE+   R V    +   ++RR
Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRR 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,744
Number of Sequences: 28952
Number of extensions: 318395
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)