Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00902
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.63 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.83 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.8  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 640 PSGFPAASPKLWYLLVFQ*TRWSSPENERPSTVCSEPSPLSAP 512
           PS   AA    W +        +SPE +    V  EP+PL++P
Sbjct: 56  PSTSAAADVDGWQVTPLPSDGTTSPEPDPEIPVAPEPAPLASP 98


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 599 QVPQLRGGGRKTRWTSRFR 655
           QVPQL GGGR+    +R R
Sbjct: 320 QVPQLAGGGRRGPGPARSR 338


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 697 LSSSRCFEPTINRTPKTASPSGFPAASP---KLWYLLVFQ*TRWSSPENE 557
           L +  C E + + TP  +S S F AAS     +++   F+     SPE+E
Sbjct: 191 LPTPTCSEASSSPTPSHSSESSFSAASSYTNTIYHQENFENYEPKSPEDE 240


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = +1

Query: 385 NHPRSIVNPGYCWRVDENGYDSELKGGPLNND 480
           +HP ++++ GY   +    YD     G +  +
Sbjct: 125 SHPYTVISNGYSSPMSSGSYDPYSPNGKIGRE 156


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 565 ENERPSTVCSEPSPLSAPQG 506
           E ERPS    +P   SAP G
Sbjct: 45  EEERPSFKSRKPKNYSAPIG 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,627
Number of Sequences: 336
Number of extensions: 4096
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)