Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00902
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   4.8  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   6.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.4  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 727  CCTKGSNCTTLSSSRCFEPTINRTPKTASPSG 632
            CCT+GS    L +S+C    I+   +  +P+G
Sbjct: 1238 CCTEGS-INALLNSKCLPEFIDAADENTTPTG 1268


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 304 ECHVLEETSLSMSPDRFTGISPFVVCHYHFTDVTDDDSSI 185
           + + +    + M+P RF G +P V    HF  V D  + I
Sbjct: 405 DLYSINHGQVEMNPRRFGGTAPLVKLGAHFKKVADFSAHI 444


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 444 IAVFVDTPTVARIDDGTRMIDRVPPFQW 361
           I+V+ +TP++A +D  T  ID V  F+W
Sbjct: 331 ISVY-ETPSLALVDKKTIKIDGVQNFEW 357


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 562 SPENSTWFTGTQASTTASGRRQE 630
           SPE+++W  G+Q +  A+  R E
Sbjct: 367 SPESTSWLPGSQTNIPANTNRSE 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,868
Number of Sequences: 5004
Number of extensions: 66876
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)