Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00902
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 36 0.033
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 35 0.058
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 35 0.077
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 35 0.077
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 33 0.31
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 32 0.41
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 32 0.41
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 32 0.54
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 31 0.71
01_01_1021 + 8061007-8061150,8061244-8061708 31 0.71
11_01_0329 + 2471015-2471075,2471152-2471432 31 1.2
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 30 2.2
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 30 2.2
07_03_0497 + 18777377-18777592,18777691-18778512 29 5.0
07_01_0562 + 4175711-4175863,4175944-4176393 29 5.0
03_03_0133 + 14727510-14727651,14727742-14728078,14728448-14728763 28 6.6
02_05_1229 - 35092135-35092252,35092662-35092764,35093014-350933... 28 6.6
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 28 8.8
07_01_0439 + 3333654-3334217 28 8.8
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 35.9 bits (79), Expect = 0.033
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Frame = +1
Query: 259 GPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWR 426
GP W + P+ G QSP+D+ RVK L L Y SIVN G+
Sbjct: 45 GPEHWGKLKPEWAQCGAGEMQSPIDLSHERVKLVRDLGYLDDSYRAAE-ASIVNRGHDIM 103
Query: 427 VDENGYDSELKGGPLNNDVYKLQQ--WHCPGERSM-GRAQNIQ 546
V +D + +N Y L+Q WH P E S+ GR +++
Sbjct: 104 V---RFDGDAGSVVINGTAYYLRQLHWHSPTEHSVDGRRYDME 143
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWNTSK 602
+EH+VDGR + ELH+VH + K
Sbjct: 131 TEHSVDGRRYDMELHMVHESAEK 153
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 35.1 bits (77), Expect = 0.058
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWNT 596
SEH VDGR + ELH+VH NT
Sbjct: 132 SEHAVDGRRYDMELHMVHLNT 152
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 34.7 bits (76), Expect = 0.077
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWN 593
SEHT+DGR + ELH+VH N
Sbjct: 130 SEHTIDGRRYDMELHMVHLN 149
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 34.7 bits (76), Expect = 0.077
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWN 593
SEHT+DGR + ELH+VH N
Sbjct: 131 SEHTIDGRRYDMELHMVHLN 150
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 32.7 bits (71), Expect = 0.31
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = +1
Query: 256 NGPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCW 423
+GP+ W + P+ R G QSP+DI T V + L L Y+ + +IVN G
Sbjct: 218 DGPSNWGKLSPEYRMCGEGRSQSPIDINTKTVVPRSDLDTLDRNYNAVN-ATIVNNGKDI 276
Query: 424 RVDENGYDSE--LKGGPLNNDVYKLQQWHCPGERSM 525
+ +G + + G P ++ WH P E ++
Sbjct: 277 TMKFHGEVGQVIIAGKPYR---FQAIHWHAPSEHTI 309
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVH 587
SEHT++GR F ELHLVH
Sbjct: 305 SEHTINGRRFPLELHLVH 322
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVH 587
SEHTV+GR + ELHLVH
Sbjct: 128 SEHTVNGRRYDMELHLVH 145
>02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 TRTQSRFGHAH-PCIQSTRVSHSPQKTPILESSSVTSVK**WQTTNGDIPVKRSGDMDRE 281
T+ + HA PCI ++ +S S K P+ ++ ++ +V+ N +K+ GD++
Sbjct: 770 TKQLTNSSHASIPCINNSGLSSSGGKVPLEDAVNIDNVR--ISFCNFGNSLKKGGDVNGF 827
Query: 282 VSSSTWHSTKSRRYCDFSRQKWSFPAAIEMAV 377
V S+ S + + S++ + FP+ +M +
Sbjct: 828 VISAFCQSLFHKNHPSKSKKNYFFPSIGDMLI 859
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 528 EGSEHTVDGRSFSGELHLVHWNTS 599
E SEHT++G F E+H+VH + S
Sbjct: 146 EPSEHTINGTRFDAEMHMVHEDPS 169
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 31.5 bits (68), Expect = 0.71
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = +1
Query: 259 GPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWR 426
GP W P ++GT QSP++I+ L PL+ Y+ + +IV+ +
Sbjct: 37 GPEHWGSLSPNFTTCSKGTYQSPINILKDDAVYNPKLEPLEMDYTAAN-TTIVDNVFNIA 95
Query: 427 VDENGYDSELKGGPLNNDVYKLQQ--WHCPGERSM 525
+ N +K ++ YKL+Q WH P E ++
Sbjct: 96 LRYNDTAGTVK---VDGKKYKLRQLHWHSPSEHTI 127
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVH 587
SEHT++G+ F+ ELH+VH
Sbjct: 123 SEHTINGQRFAVELHMVH 140
>01_01_1021 + 8061007-8061150,8061244-8061708
Length = 202
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 700 TLSSSRCFEPTINRTPKTASPSGFPAASPKLWYLLVF 590
T SSS T +P A+P PAAS KLW +L F
Sbjct: 60 TSSSSPSPATTPTPSPAAAAPKAKPAASTKLWDVLAF 96
>11_01_0329 + 2471015-2471075,2471152-2471432
Length = 113
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 259 GPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPG 414
GP W + P + G +QSP+DIVT + S +L L Y+ + ++VN G
Sbjct: 50 GPENWGKLSPAYKLCGDGKKQSPIDIVTKQAISNPNLDSLNRTYTAS-DGTLVNNG 104
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWN 593
SEHT++G F ELH+VH N
Sbjct: 124 SEHTINGFRFPLELHMVHTN 143
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 292 ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGYDSELKGGPL 471
+ G +QSP+DI T+ + ++ PL Y+ + + N + V Y+ +
Sbjct: 53 SNGKQQSPIDIDTNNLVHELNMEPLHRNYTAANATLVDN---IFNVALR-YEEAAGVLSI 108
Query: 472 NNDVYKLQQ--WHCPGERSM 525
N Y L+Q WH P E ++
Sbjct: 109 NGVKYTLKQMHWHSPSEHTI 128
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 137 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYTCETV 262
P+ SVD R + S D T V+ D+ KV+ DNEWGY+ V
Sbjct: 359 PLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVV 404
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 IPVKRSGDMDREVSSSTWHST-KSRRYCDFSRQKWSFPAAIEMAVLCQSSSFHRQSWLL 419
+PV +D +VS WH T K R+Y +F ++++ + LC R+ W+L
Sbjct: 190 VPVSDDDGID-DVSQQ-WHLTWKHRKYEEFYEEEYASIGTWHLLELCDRLHMVRREWVL 246
>07_01_0562 + 4175711-4175863,4175944-4176393
Length = 200
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 673 PTINRTPKTASPSGFPAASPKLWYLLVF 590
PT +P A+P PAAS LW +L F
Sbjct: 67 PTPTPSPAAAAPRAKPAASTGLWDVLAF 94
>03_03_0133 + 14727510-14727651,14727742-14728078,14728448-14728763
Length = 264
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 527 GGLR-TYSGRS---LVLRRTPPGSLEHKQVPQLRGGGRKTRWTSRFRSPINGW 673
GG+R T +G S LVL G+ + V GGGRK RW + R+ W
Sbjct: 167 GGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNW 219
>02_05_1229 -
35092135-35092252,35092662-35092764,35093014-35093315,
35093849-35094171
Length = 281
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 439 GYDSELKGGPLNNDVYKLQQWHCPGERSMGRAQNIQWTVARSPENSTWFTGTQASTTASG 618
G D EL+ G + QQ H P + A+++Q A SP++S + A+ A G
Sbjct: 29 GDDEELELGLSLGSKKQQQQQHAPCR--ILTARDLQPAAALSPDSSVSSSSPAAAAAAGG 86
Query: 619 RRQE 630
+R E
Sbjct: 87 KRAE 90
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 554 SLVLRRTPPGSLEHKQVPQLRGGGRK-TRWTSRFRSPINGWL 676
SL+ R PG E + RGGG+K + +S FR+ + G+L
Sbjct: 31 SLLDVRAFPGQKEEGEKQPARGGGKKSSSSSSTFRAQVRGFL 72
>07_01_0439 + 3333654-3334217
Length = 187
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 624 PPPRSCGTCLCSSEPGGVLRRTSDRPLYVLSPP 526
PPP S G PGG++R +PL V PP
Sbjct: 9 PPPSSKG----KRRPGGIIRGPRPQPLIVSPPP 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,619,911
Number of Sequences: 37544
Number of extensions: 511686
Number of successful extensions: 1695
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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