Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00902
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0) 44 2e-04
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15) 42 4e-04
SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05) 42 7e-04
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09) 38 0.008
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 32 0.55
SB_49162| Best HMM Match : HTH_1 (HMM E-Value=2.4) 32 0.55
SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 32 0.55
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 32 0.55
SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 32 0.55
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 30 2.2
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 29 2.9
SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2) 29 2.9
SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 28 6.8
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +3
Query: 504 LPWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD 638
L WG+ N +GSEH +DG++F+G +H+V +NT KY + A K D
Sbjct: 522 LHWGSKNEQGSEHLIDGKAFAGAIHIVSYNT-KYPNISAAVDKSD 565
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 259 GPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKW 372
GP+ W F Q G+ QSP+DI+TS V SL L++
Sbjct: 436 GPSKWSSSFSQCNGSSQSPIDIITSSVAFDQSLGELQF 473
>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 510 WGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEA 623
WG EGSEH VDG+ + E+H+VH+N+ Y A
Sbjct: 20 WGKDEKEGSEHRVDGKMYPSEMHIVHYNSDLYKDAASA 57
>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
Length = 291
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 GPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVN-PGYCWRVDE 435
GP+TW FP G +QSP++I T K SL L RY +VN G+ D
Sbjct: 40 GPSTWPNHFPHCGGKKQSPININTEEAKYDGSLTDLDIRYPNTTDVLLVNHHGHAIEADI 99
Query: 436 NGYDSELKGGPLNNDVYKLQQWH 504
+ + G + Y+L Q+H
Sbjct: 100 LSSEPFVATGADLSSRYRLAQFH 122
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 513 GALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD 638
G+ + +GSEH + G + E+HLVH+N KY + A G D
Sbjct: 126 GSSDIQGSEHHIHGVKYPLEMHLVHYN-DKYPNASSAQGLLD 166
>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
Length = 338
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 486 QITTMALPWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD 638
Q+ T+ +G + GSEH VDGR GE+ ++ NT KY + +AA K D
Sbjct: 103 QLETVRFHFGCNDWLGSEHAVDGRRHPGEIQMIFHNT-KYSNVSDAADKSD 152
Score = 36.3 bits (80), Expect = 0.026
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 259 GPATWIEKFPQARGTRQSPVDIVTSRV 339
GP W +P+ +G QSP++IVTS+V
Sbjct: 20 GPDDWASAYPECKGLAQSPINIVTSKV 46
>SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)
Length = 134
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/79 (34%), Positives = 38/79 (48%)
Frame = +1
Query: 256 NGPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDE 435
NGP W + + A QSP+DIVT V +SL L Y ++ N G ++
Sbjct: 16 NGPLRWHKCYIGAEPGHQSPIDIVTKDVTQDSSLGSLWNTYEPVANSTLTNDGRTLQLTF 75
Query: 436 NGYDSELKGGPLNNDVYKL 492
++ L GGPL D Y+L
Sbjct: 76 ANNNNVLSGGPL-TDEYQL 93
>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
Length = 252
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 259 GPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKW 372
GP W ++P G+ QSP++IVTS V +SL L++
Sbjct: 113 GPDHWANRYPACNGSSQSPINIVTSSVMYDSSLGKLQF 150
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 531 GSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD 638
G+EH +DG+ + +H+V++NT KY AA K D
Sbjct: 208 GAEHLIDGQRNAACIHIVNYNT-KYPDISTAANKSD 242
>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 1541
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 493 QQW-HCPGERSMGRAQNIQWTVARSPENSTWFTGTQ---ASTTASGRRQENQMD 642
+QW H PG+ + + T A+ EN WF+G Q + T S ++ +Q+D
Sbjct: 764 EQWYHVPGKENPADEASRGMTAAQLIENKRWFSGPQFLYENPTPSNQKPSSQLD 817
>SB_49162| Best HMM Match : HTH_1 (HMM E-Value=2.4)
Length = 311
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 493 QQW-HCPGERSMGRAQNIQWTVARSPENSTWFTGTQ---ASTTASGRRQENQMD 642
+QW H PG+ + + T A+ EN WF+G Q + T S ++ +Q+D
Sbjct: 52 EQWYHVPGKENPADEASRGMTAAQLIENKRWFSGPQFLYENPTPSNQKPSSQLD 105
>SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 517
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 493 QQW-HCPGERSMGRAQNIQWTVARSPENSTWFTGTQ---ASTTASGRRQENQMD 642
+QW H PG+ + + T A+ EN WF+G Q + T S ++ +Q+D
Sbjct: 422 EQWYHVPGKENPADEASRGMTAAQLIENKRWFSGPQFLYENPTPSNQKPSSQLD 475
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 493 QQW-HCPGERSMGRAQNIQWTVARSPENSTWFTGTQ---ASTTASGRRQENQMD 642
+QW H PG+ + + T A+ EN WF+G Q + T S ++ +Q+D
Sbjct: 1364 EQWYHVPGKENPADEASRGMTAAQLIENKRWFSGPQFLYENPTPSNQKPSSQLD 1417
>SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 308
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 493 QQW-HCPGERSMGRAQNIQWTVARSPENSTWFTGTQ---ASTTASGRRQENQMD 642
+QW H PG+ + + T A+ EN WF+G Q + T S ++ +Q+D
Sbjct: 213 EQWYHVPGKENPADEASRGMTAAQLIENKRWFSGPQFLYENPTPSNQKPSSQLD 266
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 571 SPENERPSTVCSEPSPLSAPQGNAIVVICKHHC*EVHLLILNHSRFRRHANSSQD*RWNE 392
+P RP T C+ PS +S Q + H L++L+H+ F SS + W +
Sbjct: 441 TPPRRRPFTACTSPSGISYWQQGHSIHDTPCHALTKRLMVLDHA-FHTPPQSSPEWAWGK 499
Query: 391 D 389
+
Sbjct: 500 N 500
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 75 PPLHKPEAPHTRTQSRFGHAHPCIQSTRVSHSPQKTPI 188
PPL + T G AHP I HSP +TP+
Sbjct: 129 PPLQEAAFSSRHTVEVHGLAHPSITQPPPRHSPPQTPV 166
>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
Length = 276
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -3
Query: 303 SATCLRKLLYPCRRTVSQVYPHSLSAIITLLMSLTTTRVSVSFEVNVRRVSTECTGERVR 124
S+TC R L C+R +S LS+I ++S T RV S V S R
Sbjct: 209 SSTCKRVLSSTCQRVLSSTCQRDLSSICQRVLSSTRQRVLSSMRPLVNSSSCPLVNSSTR 268
>SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 399 GTRMIDRVPPFQWRQGSSTFDARSHNIDGTLSSATCLRKL 280
GTR + + FQ + + + R H I G+ S+ TC RKL
Sbjct: 86 GTRRMLKNHVFQAVRATLKRECRCHGISGSCSTRTCWRKL 125
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -3
Query: 303 SATCLRKLLYPCRRTVSQVYPHSLSAIITLLMSLTTTRVSVSFEVNVRRVSTECTGERVR 124
S T +KLLY T + S ++ IT L+ TTRV F+ V + R
Sbjct: 174 SLTLAQKLLYAVPATPVE----STASDITPLLKSFTTRVRDIFKETVVTHKSAKESRRWL 229
Query: 123 TVTACECEAPPVYEGAARAT 64
+ + EC AP ++G ++ +
Sbjct: 230 SEPSYECHAPLCHQGISKVS 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,186,995
Number of Sequences: 59808
Number of extensions: 557949
Number of successful extensions: 1821
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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