Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00902
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28210.1 68415.m03425 carbonic anhydrase family protein simil... 33 0.26
At1g08080.1 68414.m00884 carbonic anhydrase family protein simil... 32 0.34
At4g21000.1 68417.m03039 carbonic anhydrase family protein simil... 31 0.60
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 30 1.4
At4g28990.1 68417.m04143 RNA-binding protein-related contains we... 30 1.4
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 30 1.4
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 30 1.8
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 3.2
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 29 3.2
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 29 4.2
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 29 4.2
At5g54330.1 68418.m06766 hypothetical protein contains Pfam prof... 28 7.3
At5g17260.1 68418.m02022 no apical meristem (NAM) family protein... 28 7.3
At1g08065.1 68414.m00882 carbonic anhydrase family protein simil... 28 7.3
>At2g28210.1 68415.m03425 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 217
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWN 593
SEHT++GR F+ ELH+VH N
Sbjct: 107 SEHTMNGRRFALELHMVHEN 126
>At1g08080.1 68414.m00884 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 275
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVH 587
SEHT++GR F+ ELH+VH
Sbjct: 135 SEHTINGRRFALELHMVH 152
>At4g21000.1 68417.m03039 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 260
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWNTS 599
SEHT++G S+ ELH+VH + S
Sbjct: 131 SEHTINGTSYDLELHMVHTSAS 152
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWNTSKYHS 611
SEHT++G+ F+ E HLVH + K ++
Sbjct: 237 SEHTINGKRFALEEHLVHESKDKRYA 262
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
(EWS oncogene)(Ewing sarcoma breakpoint region 1
protein) [Homo sapiens]
Length = 347
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 521 QWGGLRTYSGRSLVLRRTPPGSLEHKQVPQLRGGG 625
+WG + RS LR PP L P LRGGG
Sbjct: 281 RWGRVLRERSRSPPLRDVPPPPLRDGPPPSLRGGG 315
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 137 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYTCETV 262
P+ SVD R + S D T V+ D+ KVI DNEWGY+ V
Sbjct: 343 PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVV 388
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 134 SPVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYTCETV 262
+P+ SVD R + S D T V+ D+ KV+ DNEWGY+ V
Sbjct: 362 APLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVV 408
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 687 LGVSSQPLIGLLKRLVHLVFLPPPRSCGTCLCSSEP 580
L S PL+ +++ H V+ PPP C C+C+ P
Sbjct: 10 LSFSIIPLLTIVRADNHSVYCPPPPPC-ICICNPGP 44
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 137 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYTCETV 262
P+ SVD R + S D T V+ D+ KVI DNEWGY+ V
Sbjct: 340 PLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVV 385
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVH 587
SEHTV+G + ELH+VH
Sbjct: 130 SEHTVNGTRYDLELHMVH 147
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 274 IEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVD 432
+E P G++ + +++ LPP WR SV H S V + W VD
Sbjct: 92 VEWEPVREGSKMKLKTRYGNLLRANGGLPP--WRNSVTHDTSHVLDSFLWDVD 142
>At5g54330.1 68418.m06766 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 356
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHW 590
SEH V+ RS GE+ LV W
Sbjct: 236 SEHLVESRSTGGEMFLVKW 254
>At5g17260.1 68418.m02022 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 476
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +1
Query: 352 SLPPLKWRYSVNHPRSIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCPGERSMGR 531
SLPP +R+ HP Y + NG + EL+ P D+YK + W PG +S+
Sbjct: 5 SLPP-GFRF---HPTDEELITYYLKRKINGQEIELEIIP-EVDLYKCEPWDLPG-KSLIP 58
Query: 532 AQNIQWTVARSPENSTWFTGTQASTTASG 618
+++ +W SP + + G++ + G
Sbjct: 59 SKDQEWFFF-SPRDRKYPNGSRTNRATKG 86
>At1g08065.1 68414.m00882 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 263
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 534 SEHTVDGRSFSGELHLVHWNTSKYH---SFGEAAGKPD 638
SEHT++G+ F E H+VH + + +F GKPD
Sbjct: 118 SEHTLNGKRFVLEEHMVHQSKDGRNAVVAFFYKLGKPD 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,408
Number of Sequences: 28952
Number of extensions: 379717
Number of successful extensions: 1172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -