Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00901
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 33 0.033
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 0.94
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 27 2.9
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 5.0
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 6.6
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 6.6
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 6.6
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.033
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 95 VRSCSCVW--LQTPLLLIVYFSAETLSSQELLDFLKCKLDEKYWPDK-VIRVDTLPIMLM 265
V CSC W L TPL IV E SS +L L + E Y K + + ++ + L
Sbjct: 275 VTVCSCWWLILSTPLCTIVTLPVENHSSDAILTLLYNSVKESYHSFKHAMSISSIRLFLF 334
Query: 266 ERL 274
RL
Sbjct: 335 SRL 337
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 8 RGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQTPL 133
RGRVDD + GH+++ IE+ ++ V + V + L
Sbjct: 523 RGRVDDVVNISGHRLSTAEIEAALLSHDAVAESAVVGVHDEL 564
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 113 VWLQTPLLLIVYFSAETLSSQELLDFLKCKLD 208
V LQ+P L++ +S E+L SQEL+ K D
Sbjct: 88 VSLQSPYSLLLPYSKESLDSQELVHSAKQNCD 119
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 149 FSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPIMLME 268
F A+ L ++ D + + D K+WP KVI D P++ +E
Sbjct: 66 FDAKRLIGRKF-DDPEVQSDMKHWPFKVISKDGKPVLQVE 104
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 268 KTSKEILVNIYKKSNI----LQNVENIKSYLFKELKALVNKDLNYEDLQSKSF 414
K+SK++L +Y+ + + L + + S E +A+++ DLN+ED+ K F
Sbjct: 265 KSSKKLL-GLYELNTLFPPCLNKLIQLNSAFLDEFEAIMS-DLNFEDIDEKKF 315
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 447 NNLQ*TFINFP*SRKTYFTTLLSH 518
NNLQ T FP R+ Y +TL+SH
Sbjct: 919 NNLQ-TINRFPGHRERYVSTLISH 941
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 149 FSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPIMLME 268
F A+ L + D + + D K+WP KVI D P++ +E
Sbjct: 66 FDAKRLIGRRFND-PEVQSDMKHWPFKVIEKDGKPLIQVE 104
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.6
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Frame = +1
Query: 292 NIYKKSNILQNVENIKSYLFKELKALVNKDLNYEDLQSKSFFSLGGTSF-LAVTICNKLS 468
N+ KS V ++SY+ ++ K + ++ EDL+S +S G T ++ + + L+
Sbjct: 280 NVENKSMESDAVSTVRSYMVRDPKTNDSFEVKREDLESG--YSYGRTIVPISRSDEDVLA 337
Query: 469 L-TFPE------VGKHILPHYYHIIKVLVMF*KLLPKTQTA*KINSKRV--SKETDLQAA 621
L T P + K LP YY I + ++PK K+N S E + + A
Sbjct: 338 LDTIPGYEILGFIPKSSLPIYYTISDTNI----IVPKDDFESKLNFSAFVQSLEREHRYA 393
Query: 622 MVKIAYLTKKVPVALEIL 675
+ + K VPV L ++
Sbjct: 394 LARFVSKDKGVPVLLVLM 411
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 648 KGAGGIRNSNTVEFVVQWTFDTGK 719
K I +S T++ VV+W F +GK
Sbjct: 313 KNRSSIASSRTMDDVVRWLFSSGK 336
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 107 SCVWLQTPLLLIVYFSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTL 250
SCV L +VY SSQ++ D+L L Y DK DT+
Sbjct: 200 SCVICSIRLANLVYIDRRQ-SSQQITDYLDLSLQTYYSLDKSNVPDTI 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,067
Number of Sequences: 5004
Number of extensions: 62848
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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