Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00901
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 32 0.56
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 31 1.3
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 31 1.3
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 30 1.7
10_08_1051 - 22562840-22562971,22563474-22563576,22563701-225637... 30 2.3
08_01_0294 + 2376552-2376935,2377359-2377548,2377782-2377921,237... 28 9.1
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 28 9.1
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 2 FYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCV 115
F GRVDD I GH+I +ES ++ P+ + V
Sbjct: 674 FLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVV 711
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 59 HSIESTVMQCPRVRSCSCVWLQTPLLLIVYFSAETLSSQELLDFLKCK 202
HSI+ M CP + S +P L ++ + Q+ LD+++C+
Sbjct: 94 HSIQGCPMPCPHIHSQLVELSPSPPLFAIFHLFANVLYQDALDYMQCE 141
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 5 YRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQTPLL 136
+ GR D T+K +G + +L +EST+ + P V + + + L
Sbjct: 419 FLGRKDRTVKIYGQRFSLQEVESTLNEHPDVSAAAVTFQNNEFL 462
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 11 GRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCV 115
GRVDD I GH+I +ES ++ P+ + V
Sbjct: 572 GRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVV 606
>10_08_1051 -
22562840-22562971,22563474-22563576,22563701-22563768,
22563896-22564053,22564706-22564895,22565162-22566205
Length = 564
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Frame = +2
Query: 2 FYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVYFSAET 163
F GR+ DTIK G +I +E+ +++ P + + + P+ +V S T
Sbjct: 449 FIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGST 508
Query: 164 LSSQELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
LS +++++ ++ KVI V+ +P ++L++
Sbjct: 509 LSCTHVMEYVAKQVASYKRVRKVIFVEAIPKSAAGKVLRR 548
>08_01_0294 +
2376552-2376935,2377359-2377548,2377782-2377921,
2378101-2378168,2378289-2378391,2378668-2378817
Length = 344
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 11 GRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSAETLSS 172
GR+ DTIK G +I +E ++ P + + + P+ +V S LS
Sbjct: 226 GRLKDTIKYKGFQIAPGDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSC 285
Query: 173 QELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
+++++++ ++ KV+ V+ +P ++L++
Sbjct: 286 KQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRR 322
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 101 SCSCVWLQTPLL-LIVYFSAETLSSQELLDFLKCKLDEKYWPDKVI 235
+C CV+++ ++ +++ S +EL + C+L + WP ++
Sbjct: 552 ACECVYVRAMVIKALIWMQNPHESFEELKSIIACELADPAWPSSLL 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,973
Number of Sequences: 37544
Number of extensions: 343191
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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