Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00901
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 31   1.00 
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)             29   5.3  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     29   5.3  
SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)           29   5.3  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      28   9.3  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         28   9.3  
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               28   9.3  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  28   9.3  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     28   9.3  

>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 465 FINFP*SRKTYF---TTLLSHNKSIGDVLKTITQDTNCLENKFKKSIKR 602
           F++ P SRKTYF   +  L HN+ +G+ ++      + +E+   K+I+R
Sbjct: 252 FVDAPTSRKTYFDRGSASLKHNREVGNAIRWALPAFSTMEDSRTKAIRR 300


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
 Frame = +2

Query: 5   YRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQ-TP--LLLIVYFS----AET 163
           Y GR+DD +K  G ++ + SIE+ + +   V+  + V L  +P   L++ + +     + 
Sbjct: 418 YLGRIDDQVKIRGFRVEIGSIETHLQRQENVKMAAVVVLSPSPGQQLVVAHLTLVDKTKG 477

Query: 164 LSSQELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
             +Q+ +  +K  L E   P+  I  + LP +   ++ KK
Sbjct: 478 FQAQQAVVKMKIALPEYMIPNGYIIHEELPTLASGKVDKK 517


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 585 KKSIKRNRSTSSHGENSLSYKKGAG-GIRNSNTVEFVVQ-WTFDTGKCVDASPAL 743
           + S  RN   + HG N+ S+  G+G G  NSNT+  V +  T  T    D +  L
Sbjct: 131 QSSDSRNEDITEHGINNASFTIGSGSGAVNSNTLSSVKRSGTVGTSGMADTADCL 185


>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
          Length = 855

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 493 VFLLQGKLMKVYCKLLLLGMTYHQVKKNFYFE 398
           +FL+ G +M +   + LL  TY QV+ N ++E
Sbjct: 678 LFLIMGVVMLMNMMIALLSNTYQQVEDNSFYE 709


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 14  RVDDTIKRFGHKINLHSIESTVMQC---PRVRSCSC 112
           R D T K       LHS+++T +QC    R+RSC C
Sbjct: 580 RSDRTFKELKGIRKLHSVKTTPVQCKISTRLRSCLC 615


>SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)
          Length = 417

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 740 CRRSINTFPSIKSPLDNKLHC 678
           CRR +N+F  +KS + +KL+C
Sbjct: 168 CRRCLNSFRDLKSLIKHKLYC 188


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 498 FTTLLSHNKSIGDVLKTITQDTNCLENKFK--KSIKRNRSTSSHGENSLSYKKGAGGIRN 671
           FT + SH + +   ++  TQ+    E   K  K ++  +  ++ G        G GG+ +
Sbjct: 604 FTEMDSHEEKVFQAVRQ-TQEREAKEEMKKRAKELQAAKVAAAKGRGGRVAMPGFGGMGS 662

Query: 672 SNTVEFVVQWTFDTGKCVDASPA 740
            +T   +     DT   +D +PA
Sbjct: 663 GSTKSDISSGNMDTVPVIDPTPA 685


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
           N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 190


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
           N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 846


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519  NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
            N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 2043


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
           N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 130


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 537 VLKTITQDTNCLENKFKKSIKRNRSTSSHGEN 632
           V+  + +   C+EN F++ IKR + TSS  ++
Sbjct: 548 VVNALFKQRACIENIFRRLIKRRKRTSSETQS 579


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
           N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 44


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 NKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHG 626
           N+SI  VLK  TQ+   ++ +F+K +   RST   G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTG 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,731,895
Number of Sequences: 59808
Number of extensions: 423029
Number of successful extensions: 1025
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)