Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00901
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    46   3e-05
U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical p...    38   0.006
Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical pr...    36   0.031
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    31   0.87 
U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like ...    29   2.7  
AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    29   4.7  
AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +2

Query: 5    YRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQTPLLLIVYFSAETLSSQE-L 181
            + GR D  +K  GH+I+L  IE   +    + SCSCV  +   L++ +   E   +QE L
Sbjct: 1102 FMGRKDSQVKVRGHRIDLFEIECAALSSNLIDSCSCVVGENCQLVLFFKENENPDTQEKL 1161

Query: 182  LDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
             + L+ +L     P +++ +D+ P+    ++ KK
Sbjct: 1162 KNHLEKELIAYKVPSRLVGLDSFPLTRTGKIDKK 1195


>U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical
           protein ZK1127.2 protein.
          Length = 565

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = +2

Query: 11  GRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSAETLSS 172
           GR+ + IK  G ++    IE  ++  P+V+ C+ + +      ++P   IV     TL+ 
Sbjct: 439 GRIKELIKVNGMQVPPVEIEDVLLLHPKVKDCAVIGVPDEHKGESPKAYIVK-KDHTLTE 497

Query: 173 QELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
            EL +F++ KL    W D    +D++P +   ++ +K
Sbjct: 498 AELTEFVRQKLSSYKWIDTYEFIDSIPKLPSGKIQRK 534


>Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical
           protein AH10.1 protein.
          Length = 566

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
 Frame = +2

Query: 11  GRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSAETLSS 172
           GR+ + IK  G ++    IE  ++  P+V+ C+ + +      ++P   IV     TL+ 
Sbjct: 439 GRIKELIKVNGMQVPPVEIEDVLLLHPKVKDCAVIGIPDEQKGESPRAYIVK-KDHTLTE 497

Query: 173 QELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKK 283
            EL DF+   L    W D    +D +P +   ++ +K
Sbjct: 498 AELSDFVHKMLSSYKWIDTYEFIDAIPKLPSGKIQRK 534


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/84 (22%), Positives = 38/84 (45%)
 Frame = +2

Query: 5    YRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQTPLLLIVYFSAETLSSQELL 184
            Y GR+D  +K  G +IN+  IE  ++ C  +     ++    L+  +      L    L+
Sbjct: 7398 YIGRMDSQVKCKGVRINISEIEKELILCLGLLQIVVLYSNQMLIAFIVDQKSKLLHDSLV 7457

Query: 185  DFLKCKLDEKYWPDKVIRVDTLPI 256
              LK   +    PD  ++++ +P+
Sbjct: 7458 KTLK---NRTQIPDYFVQINKMPL 7478



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 367  LVNKDLNYEDLQSKSFFSLGGTSFLAVTICNKLS 468
            L  + L+ EDLQSK F  LG  S   V   N+L+
Sbjct: 2961 LATETLSAEDLQSKGFTELGMDSLSIVDFVNRLN 2994


>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 519 NKSIGDVLKT-ITQDTNCLENKFKKSIKRNRSTSSHGENSLSY 644
           N  I  +L T I   TN LENK+ +++   RSTS    ++ +Y
Sbjct: 561 NPPIASLLPTRILSATNVLENKYNENVSSRRSTSRERSSNRNY 603


>Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical
           protein F59A1.12 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -2

Query: 508 NVVKYVFLLQGKLMKVYC---KLLLLGMTYHQVKKNFYFEDLRNSNLYLLK 365
           N+ + V +  GKL+++YC    L+++GM Y  +  ++ F +++  N+  +K
Sbjct: 133 NLHRLVLIKNGKLLRMYCMALPLMVIGM-YGDISDSYSFVEIQTLNINYVK 182


>Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical
           protein F22G12.3 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = +3

Query: 414 FFTWWYVIPSSNNLQ*TFINFP*SRKTYFTTLLSHNKSIGDVLKTITQDTNCLENKFKKS 593
           F   W  + S+ NL+    + P   ++ F+ LL  ++S+  +        N +ENKFK  
Sbjct: 243 FLRKWINMESNLNLKRLEFDIP-ELQSLFSILLLPSESVASI--ATNAGMNMIENKFKNF 299

Query: 594 IKRNRSTSSHGENSLSYKKGAG 659
           +   R+  + G   + + KG G
Sbjct: 300 MVIRRNDGAIGVLGIRWTKGHG 321


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 414  FFTWWYVIPSSNNLQ*TFINFP*SRKTYFTTLLSHNKSIGDVLKTITQDTNCLENKFKKS 593
            F TW   +P  N +  T  +F  S+K+YF   ++    I D+LK    D    E  FKK+
Sbjct: 1340 FCTWTIKVPKGNRIVATVHHFSISQKSYFEGGIN---CITDMLKVDDTDLAEAEVTFKKT 1396


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 414  FFTWWYVIPSSNNLQ*TFINFP*SRKTYFTTLLSHNKSIGDVLKTITQDTNCLENKFKKS 593
            F TW   +P  N +  T  +F  S+K+YF   ++    I D+LK    D    E  FKK+
Sbjct: 1340 FCTWTIKVPKGNRIVATVHHFSISQKSYFEGGIN---CITDMLKVDDTDLAEAEVTFKKT 1396


>Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical
           protein F11A3.1 protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
 Frame = +2

Query: 2   FYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSAET 163
           F   R+ + IK  G ++    +E  ++  P++R C+ + +      + P   +V  +  T
Sbjct: 435 FIVDRLKELIKVKGLQVPPAELEDLLLSHPKIRDCAVIGIPDAKAGELPKAFVVR-ADNT 493

Query: 164 LSSQELLDFLKCKLDE-KYWPDKVIRVDTLPIMLMERLLKK 283
           L+ QE+ DF+K K+   K     V  ++ +P     ++L++
Sbjct: 494 LTEQEVKDFVKPKVSPYKQLEGGVEFIEEIPKSAAGKILRR 534


>AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like
           protein protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 559 SWVIVFKT--SPILLLCDNNVVKYVFLLQGKLMKVYCKLLLLGMT 431
           +W++ F T  + I+ LC + V+KY       +MK YC+ L +G+T
Sbjct: 258 NWIVWFVTIGNSIVGLCISLVMKYA----DNVMKTYCQSLAIGLT 298


>AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical
           protein F44C8.7 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 559 SWVIVFKT--SPILLLCDNNVVKYVFLLQGKLMKVYCKLLLLGMT 431
           +W++ F T  + I+ LC + V+KY       +MK YC+ L +G+T
Sbjct: 258 NWIVWFVTIGNSIVGLCISLVMKYA----DNVMKTYCQSLAIGLT 298


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -2

Query: 496 YVFLLQGKLMKVYCKLLLLGMTYHQVKKNFYFEDLRNSNLYLLKP 362
           ++F+   + + V+C +L L +T H   + FY + +  ++L  ++P
Sbjct: 86  FMFIGPSEFLTVFCCILFLPVTLHMRFEYFYKKSVNGTSLLSIQP 130


>AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 268 KTSKEILVNIYKKSNILQNVENIKSYLFKELKALVNKD-LNYEDLQSKSFFSLGGTSF 438
           KTS+ ++ N+   +N    ++ ++S + +EL+  VN++ L YE++  +     G T F
Sbjct: 321 KTSRPMIENLPVAANFSVKMQQLRSEV-EELQTKVNEERLRYEEITKRQGSGTGSTFF 377


>AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical
           protein F07G11.7 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 298 YKKSNILQNVENIKSYLFKELKALVNKD 381
           Y+ +N+ ++ +N+K Y F +++A  NKD
Sbjct: 48  YEFANVTKDCDNLKEYNFLDIQAAKNKD 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,391
Number of Sequences: 27780
Number of extensions: 338475
Number of successful extensions: 978
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)