Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00901
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.43 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -3

Query: 273 SLSMSIIGKVSTLITLSGQYFSSSLHLRKSNNS*LLNVSAEKYTMRRRGV 124
           S+  S IG+V  LIT+     S+ + + + +N+ L+++  ++YT R   V
Sbjct: 347 SVLKSKIGQVF-LITILDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSV 395


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 240 WILCL*CSWK 269
           WILC  C WK
Sbjct: 184 WILCYFCIWK 193


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 557 RHKLLRK*IQKEYQKKPIYKQP 622
           +HK + K I+K  + K I K+P
Sbjct: 113 KHKFISKKIKKTMENKDITKRP 134


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 439 GMTYHQVKKNFYF 401
           G T+H+ +K FYF
Sbjct: 179 GWTFHEGRKQFYF 191


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 WILCL*CSWKDF*RNPSQYL*KIKHTTKCGKYQIISF*RIKGFS 371
           WI+C  C WK       ++  K+ + T    Y +++   I+G +
Sbjct: 217 WIMCYFCIWKGV-----KWTGKVVYFTSLFPYALLTILLIRGLT 255


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 WILCL*CSWKDF*RNPSQYL*KIKHTTKCGKYQIISF*RIKGFS 371
           WI+C  C WK       ++  K+ + T    Y +++   I+G +
Sbjct: 270 WIMCYFCIWKGV-----KWTGKVVYFTSLFPYALLTILLIRGLT 308


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 55  FTFYRIYCDAVSKSKVL 105
           FT+Y+IY  AV ++K L
Sbjct: 224 FTYYKIYRAAVIQTKSL 240


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 445 LLGMTYHQVKKNFYFEDLRNSNLY 374
           + GM    V  N Y+  L + +LY
Sbjct: 254 IFGMALSPVTNNLYYSPLTSHSLY 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,328
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)