Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00901
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)...    30   1.4  
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta...    30   1.4  
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta...    30   1.4  
At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative / aceta...    30   1.9  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    30   1.9  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    30   1.9  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    29   2.5  
At5g56580.1 68418.m07061 mitogen-activated protein kinase kinase...    29   3.3  
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta...    28   5.8  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    28   7.6  

>At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)
           contains Pfam profiles PF01486: K-box region and
           PF00319: SRF-type transcription factor (DNA-binding and
           dimerisation domain)
          Length = 208

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 550 IVFKTSPILLLCDNNVVKYVFLLQGKLMKVYCKLLLLGMTYHQVKK 413
           +V K   I +LCD  V   +F   GK++   C  + LG    Q +K
Sbjct: 28  LVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQK 73


>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 416

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 388 YEDLQSKSFFSLGGTSFLAVTICNKLSLTFPEVGKHILP 504
           Y DL+     SL     +++ + N + +++P+V  HILP
Sbjct: 49  YTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILP 87


>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 316

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 388 YEDLQSKSFFSLGGTSFLAVTICNKLSLTFPEVGKHILP 504
           Y DL+     SL     +++ + N + +++P+V  HILP
Sbjct: 49  YTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILP 87


>At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative /
           acetate-CoA ligase, putative similar to SP|P27550
           (Escherichia coli) and gi:8439651 (Homo sapiens);
           contains Pfam AMP-binding enzyme domain PF00501
          Length = 693

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 11  GRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQ 124
           GRVDD I   GH+I    +ES ++  P+    + V ++
Sbjct: 560 GRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 597


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
 Frame = +2

Query: 23  DTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSA--------- 157
           D +K  G+K++   IEST+++ P V  C  + L      +    +I+  SA         
Sbjct: 432 DIMKVGGYKLSALEIESTLLEHPTVAECCVLGLTDNDYGEAVTAIIIAESAAKKRREDES 491

Query: 158 -ETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPIMLMERLLKKS*SISIKNQ 310
              ++ +EL  + K KL     P +++  ++LP   M ++ KK    S++NQ
Sbjct: 492 KPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGKVNKKELKKSLENQ 543


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 265 GKTSKEILVNIYKKSNILQNVENIKSYLFKELKALVNKDLNYED 396
           G  + E+L+N+ + S  L +   ++SYLF+++  + N D NY D
Sbjct: 623 GHVAFELLLNLLR-SRALSDF--LESYLFQQILVVENSDFNYND 663


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +1

Query: 349 FKELKALVNKDLNYEDLQSKSFFSLGGTSFLAVTICNKLSLTFP 480
           F  LKA+   DL++ DLQ     SLGG SFL+    +  +LT P
Sbjct: 683 FGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGP 726


>At5g56580.1 68418.m07061 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK6) similar to NQK1 MAPKK
           [Nicotiana tabacum] gi|12718822|dbj|BAB32405;
           mitogen-activated protein kinase kinase (MAPKK) family,
           PMID:12119167
          Length = 356

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 508 NVVKYVFLLQGKLMKVYCKLLLLGMTYHQVKKNFYFEDLRNSNL 377
           +V++ V  +    + V CK +LLG+ Y   +++    D++ SNL
Sbjct: 156 DVIRQVKTILEPYLAVVCKQVLLGLVYLHNERHVIHRDIKPSNL 199


>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 423

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 388 YEDLQSKSFFSLGGTSFLAVTICNKLSLTFPEVGKHILP 504
           Y DL+     SL     +++ + N + +++P+V  H+LP
Sbjct: 46  YTDLKVTEVASLFQVDPVSMLLSNSIDISYPDVENHVLP 84


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 740 CRRSINTFPSIKS-PLDNKLHCIRISNAT 657
           CR S +T  +I S P   KLHC   SNAT
Sbjct: 63  CRSSASTSVTIPSLPTSPKLHCRTTSNAT 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,439
Number of Sequences: 28952
Number of extensions: 306129
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)