Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00900
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   107   9e-25
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   107   9e-25
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.017
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   4.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   5.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.9  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   5.9  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  107 bits (257), Expect = 9e-25
 Identities = 53/82 (64%), Positives = 61/82 (74%)
 Frame = +2

Query: 8   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 187
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 188 GRILTGVVQKMKMQRTIVIRRD 253
           GRILTG V   KM RTI+IRR+
Sbjct: 65  GRILTGTVVSTKMHRTIIIRRE 86



 Score = 91.1 bits (216), Expect = 8e-20
 Identities = 36/54 (66%), Positives = 49/54 (90%)
 Frame = +1

Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
           +LH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 87  YLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  107 bits (257), Expect = 9e-25
 Identities = 53/82 (64%), Positives = 61/82 (74%)
 Frame = +2

Query: 8   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 187
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 188 GRILTGVVQKMKMQRTIVIRRD 253
           GRILTG V   KM RTI+IRR+
Sbjct: 65  GRILTGTVVSTKMHRTIIIRRE 86



 Score = 91.1 bits (216), Expect = 8e-20
 Identities = 36/54 (66%), Positives = 49/54 (90%)
 Frame = +1

Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
           +LH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 87  YLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 343 IGDIVTIGECRPLSKTVRFNVLKV 414
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 241 HDSSLHLHFLNDAGEDAAADRNVTSEGTL 155
           HDS+LH +FLN   +D   +   T+E  L
Sbjct: 31  HDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146 IDKKC-PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDSFTTYPNTI 280
           I+ KC   +  +S+  + L G+++++++ RT++ + +   TY N I
Sbjct: 55  IESKCNELSSEISLLRKRL-GIIEEIEIPRTLIDQYECLVTYHNGI 99


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 173 NVSIRGRILTGVVQKMKMQRTIVIRRDSFTTYPNTIGSRNGT 298
           +V IRG +L+G++    +    +    SF+ + N + S + T
Sbjct: 354 SVPIRGLLLSGIINNPDVLPKNIYEDTSFSVFANLVRSNSPT 395


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 244 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 137
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 140 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 42
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 23  FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 199
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 200 TGV 208
           TGV
Sbjct: 222 TGV 224


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 VEIGDIVTIGECRPLSKTVRFNVL 408
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,196
Number of Sequences: 5004
Number of extensions: 37435
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)