Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00900
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 112 2e-25
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 112 2e-25
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 111 4e-25
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 111 4e-25
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 109 1e-24
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 96 1e-20
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.27
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 31 0.47
08_02_0383 - 16539472-16539633,16543044-16543205 30 1.1
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.4
04_04_0496 + 25631832-25631972,25632094-25632160,25634993-256350... 29 1.9
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 3.3
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 5.8
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 7.7
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 27 7.7
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 112 bits (269), Expect = 2e-25
Identities = 60/109 (55%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRDSFTTYPNTIGSRNGTGICPC 313
TG VSIRGRI+ G KM RTI++RR+ R G + PC
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 9/63 (14%)
Frame = +1
Query: 253 FLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNV 405
+LH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV
Sbjct: 91 YLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNV 149
Query: 406 LKV 414
LKV
Sbjct: 150 LKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 112 bits (269), Expect = 2e-25
Identities = 60/109 (55%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRDSFTTYPNTIGSRNGTGICPC 313
TG VSIRGRI+ G KM RTI++RR+ R G + PC
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 9/63 (14%)
Frame = +1
Query: 253 FLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNV 405
+LH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV
Sbjct: 91 YLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNV 149
Query: 406 LKV 414
LKV
Sbjct: 150 LKV 152
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 111 bits (266), Expect = 4e-25
Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRI+ G KM RTI++RR+
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRN 90
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 111 bits (266), Expect = 4e-25
Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRI+ G KM RTI++RR+
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRN 90
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +1
Query: 280 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 109 bits (262), Expect = 1e-24
Identities = 56/89 (62%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCPF
Sbjct: 2 AEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRI+ G KM RTI++RR+
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRN 90
Score = 74.9 bits (176), Expect = 3e-14
Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 7/61 (11%)
Frame = +1
Query: 253 FLHYLPKYNR-------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLK 411
+LH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLK
Sbjct: 91 YLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLK 149
Query: 412 V 414
V
Sbjct: 150 V 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 96.3 bits (229), Expect = 1e-20
Identities = 47/79 (59%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Frame = +2
Query: 29 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 196
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 197 LTGVVQKMKMQRTIVIRRD 253
+ G KM RTI++RR+
Sbjct: 63 IAGTCHSAKMNRTIIVRRN 81
Score = 83.4 bits (197), Expect = 8e-17
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +1
Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
+LH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 82 YLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 385 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 278
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 268 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 399
PKY R E+ + H P ++GD+V + RP+SKT F
Sbjct: 996 PKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSRPISKTKHF 1037
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 250 RFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
R H+ YNR+ KR H D IGD V + RPLSK + V ++
Sbjct: 23 RLFHH-KMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSRPLSKRKHWVVAEI 74
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 151 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 20
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>04_04_0496 +
25631832-25631972,25632094-25632160,25634993-25635054,
25636173-25636248,25636355-25636429,25637768-25637825,
25637955-25638207,25639030-25639037,25639159-25639411,
25639503-25639605,25639750-25639852,25639947-25640160
Length = 470
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 381 QRSAFADRYNITNLHVPEARRQMHGHIPVPFLEPIVFG*VVKESRRI 241
+R +A +NI H + P FL+PI FG +E R I
Sbjct: 218 RREPYAAAHNILLSHAAAVHNYKTNYQPCRFLDPIFFGDYPREMREI 264
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 88 VTHVLPLHATFPVQENGGLFLKRFLCL 8
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 50 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 193
N G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 120 PERRLRVPTLTRSVPSLVTF 179
PERR VP RS+ LVTF
Sbjct: 155 PERRRNVPVAQRSLEGLVTF 174
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 214 ENEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTV 393
E ED E+Y +++ PK + M L PC+R E+ +I +PLS V
Sbjct: 106 EVEDEEDYVLREIDVYFTPKPFDEDTMLYVMQYPLRPCWRPYELNEICKEVRVKPLSSKV 165
Query: 394 RFNV 405
++
Sbjct: 166 EVDL 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,540
Number of Sequences: 37544
Number of extensions: 258681
Number of successful extensions: 615
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -