Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00900
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.052
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 28 3.4
SB_40621| Best HMM Match : DUF689 (HMM E-Value=7.8) 27 7.9
SB_19864| Best HMM Match : Baculo_p24 (HMM E-Value=1.7) 27 7.9
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4) 27 7.9
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 27 7.9
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 27 7.9
SB_15532| Best HMM Match : Baculo_p24 (HMM E-Value=1.5) 27 7.9
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 122 bits (293), Expect = 2e-28
Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 16/100 (16%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAI 133
A+QTE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REAI
Sbjct: 2 AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61
Query: 134 EGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
EGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRD
Sbjct: 62 EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRD 101
Score = 102 bits (244), Expect = 2e-22
Identities = 39/54 (72%), Positives = 50/54 (92%)
Frame = +1
Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
+LHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 102 YLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 346 GDIVTIGECRPLSKTVRFNVLKV 414
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 149 QCRYPQSPLWEF*SLNQHSYGDACP 75
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 339 HVPEARRQMHGHIPVPFLEP 280
HV +A R HG++P+P L P
Sbjct: 82 HVDQACRSFHGNLPLPVLAP 101
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 17 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 193
+A + T ++RK K+K+ + KN+ K PR T++ + G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275
Query: 194 ILTGVVQK 217
G Q+
Sbjct: 276 ARAGNAQR 283
>SB_40621| Best HMM Match : DUF689 (HMM E-Value=7.8)
Length = 176
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
>SB_19864| Best HMM Match : Baculo_p24 (HMM E-Value=1.7)
Length = 222
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
>SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4)
Length = 335
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 35 ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRG-RILTGVV 211
A F KG D+ H + G + +E K C F G++ +RG +++G V
Sbjct: 11 AKAFAAVKGKKTLPDLHHVTSKDCGRGVHSDGLETPLTIKNCVFAGSM-VRGIDVVSGHV 69
Query: 212 QKMKMQRTIVIRRDSFTTYPNTIGSRNGTG 301
+ ++ T+V+ TT +G R G G
Sbjct: 70 -SLTIRDTLVVN----TTNGGGLGIRQGAG 94
>SB_15532| Best HMM Match : Baculo_p24 (HMM E-Value=1.5)
Length = 222
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 217 NEDAENYRDPPRFLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
+E A + + +FL YLP +F K + N L C ++++ GD
Sbjct: 3 SEAASEHSELTKFLSYLPSKKQF-KWNSNAKSLLEFCIKELQDGD 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,959
Number of Sequences: 59808
Number of extensions: 286546
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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