Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00900
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 116 8e-27
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 113 4e-26
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 109 7e-25
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.53
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.53
At4g26980.1 68417.m03882 expressed protein 27 4.9
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.6
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 116 bits (279), Expect = 8e-27
Identities = 59/89 (66%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRIL+G KMQRTI++RRD
Sbjct: 62 TGTVSIRGRILSGTCHSAKMQRTIIVRRD 90
Score = 86.2 bits (204), Expect = 1e-17
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = +1
Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
+LH++ KY R+EKRH N+ H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 91 YLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 113 bits (273), Expect = 4e-26
Identities = 57/89 (64%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRIL G KMQRTI++RRD
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIVRRD 90
Score = 83.4 bits (197), Expect = 7e-17
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +1
Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
+LH++ KY R+EKRH N+ H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 91 YLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 109 bits (263), Expect = 7e-25
Identities = 57/89 (64%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 ADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPF 166
A+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61
Query: 167 TGNVSIRGRILTGVVQKMKMQRTIVIRRD 253
TG VSIRGRIL G KMQRTI++RR+
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIVRRN 90
Score = 83.8 bits (198), Expect = 5e-17
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +1
Query: 253 FLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
+LH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 91 YLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.53
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 44 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 172
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 268 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 414
PKY R + + H P ++GD+V + + RP+SKT F L V
Sbjct: 77 PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 113 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 217
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 328 SKATNARTYSCAVSRTYCIWVGSEGIAADHDSSLHLHFLNDAG 200
SK + YSC +S + WV +AA H+ S + ++ G
Sbjct: 96 SKIIEEKRYSCIISSPFTPWV--PAVAASHNISCAILWIQACG 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,835
Number of Sequences: 28952
Number of extensions: 204144
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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