Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00899
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:...   118   2e-25
UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23...    91   3e-17
UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome s...    83   4e-15
UniRef50_Q0UM55 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q8YRX5 Cluster: All3317 protein; n=1; Nostoc sp. PCC 71...    34   3.6  
UniRef50_Q2GRS8 Cluster: Predicted protein; n=1; Chaetomium glob...    33   4.8  
UniRef50_O75469 Cluster: Orphan nuclear receptor PXR; n=32; Ther...    33   8.3  

>UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:
           LIX1-like protein - Homo sapiens (Human)
          Length = 337

 Score =  118 bits (283), Expect = 2e-25
 Identities = 58/84 (69%), Positives = 66/84 (78%)
 Frame = +3

Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
           TLPGG+CFGSFQ CPTKAEARRSAAKIALMNSVFNEH SRRI+D FIEK+V+EA ASF G
Sbjct: 141 TLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNG 200

Query: 456 DTSNPHQDPSAGIAAFRLCWKRTK 527
           +      +P+ GI AFR   +  K
Sbjct: 201 NREEA-DNPNTGIGAFRFMLESNK 223



 Score =  105 bits (251), Expect = 1e-21
 Identities = 47/53 (88%), Positives = 52/53 (98%)
 Frame = +2

Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
           MLE+NKG++MLEFQELMTVFQLLHWNGSL+AMRERQCSRQEV+AHYS RALDD
Sbjct: 218 MLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDD 270



 Score = 37.1 bits (82), Expect = 0.39
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 148 VNVVQALQEFWQVKXXXXXXXXXXXLVIY*SVPAAHRP 261
           VNVV+ALQEFWQ+K           LV+Y  VP+   P
Sbjct: 98  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135


>UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23;
           Coelomata|Rep: Protein limb expression 1 homolog - Homo
           sapiens (Human)
          Length = 282

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 38/53 (71%), Positives = 49/53 (92%)
 Frame = +2

Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
           MLE+N G+TMLEFQELMT+FQLLHWNGSL+A+RE +CSRQEV+++YS  +LD+
Sbjct: 148 MLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDE 200



 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 43/76 (56%), Positives = 57/76 (75%)
 Frame = +3

Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
           TLPGG+CFG+FQ C ++AEARR AAK+AL+NS+FNE  SRRI+  FI ++V EA AS +G
Sbjct: 71  TLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG 130

Query: 456 DTSNPHQDPSAGIAAF 503
            T +   DPS  + A+
Sbjct: 131 -TLDDADDPSTSVGAY 145


>UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 12 SCAF14993, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 666

 Score = 83.4 bits (197), Expect = 4e-15
 Identities = 36/54 (66%), Positives = 47/54 (87%)
 Frame = +2

Query: 506 VMLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
           ++L +  GRTMLEFQE+MTVFQLLHWNG+L+A+RERQ SRQ V+++YS R LD+
Sbjct: 134 LLLHSYIGRTMLEFQEMMTVFQLLHWNGTLKALRERQYSRQSVISYYSQRGLDE 187



 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 31/78 (39%), Positives = 49/78 (62%)
 Frame = +3

Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
           TLPGG+CFG+++ C  +AEARR AA++ALMNS+ NE   R I+  FI +++ +A A+   
Sbjct: 58  TLPGGSCFGNYKVCLFQAEARRDAARVALMNSLVNELPCRCINAQFISQSLQQA-ATHCA 116

Query: 456 DTSNPHQDPSAGIAAFRL 509
            +    +D    +  + L
Sbjct: 117 VSMEDARDSGTSLGTYSL 134


>UniRef50_Q0UM55 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 691

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 592 RPVPVEQLEYRHQLLEFQHRPTFVRFQHNLNAAIPALGSWCGLLVSPAKDARASAT 425
           R +P E L++ H      HRPT  R   + + ++PA  + CG+L+ P+  A    T
Sbjct: 457 RSIP-ETLKFIHPESGRHHRPTSARHTSSASGSLPAERTKCGILIYPSSSAHQRLT 511


>UniRef50_Q8YRX5 Cluster: All3317 protein; n=1; Nostoc sp. PCC
           7120|Rep: All3317 protein - Anabaena sp. (strain PCC
           7120)
          Length = 1231

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 655 PSRVVRYDFLPRALPLAHRSQRPVPVEQLEYRHQLLEFQHRP 530
           P   + YD  P+ L L  + +RP+PV +LE  HQLL  +  P
Sbjct: 495 PDAPIPYD--PKELNLPLQLERPIPVARLELNHQLLVNERSP 534


>UniRef50_Q2GRS8 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 375

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 580 VEQLEYRHQLLEFQHRPTFVRFQHNLNAAIPALGSWCGLLVSPAKDARASA 428
           ++ LEYR+ LL      T   F+  L  A+PA  S        A DA A A
Sbjct: 314 IQDLEYRYSLLRESLESTHTMFREALALAVPAFASHLAETAKKASDAAAQA 364


>UniRef50_O75469 Cluster: Orphan nuclear receptor PXR; n=32;
           Theria|Rep: Orphan nuclear receptor PXR - Homo sapiens
           (Human)
          Length = 434

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
           EQ     +L++ Q +     F H  N  +P  L S C L  S    +R  A     KWS 
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201

Query: 400 IRRDSCSL 377
           +R+D CSL
Sbjct: 202 VRKDLCSL 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,671,894
Number of Sequences: 1657284
Number of extensions: 8788010
Number of successful extensions: 26199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26192
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)