Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00899
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    29   0.81 
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   9.9  

>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 356 YFSGAASCFRFSWAVLKTAKARSTGERDVADVGRWAAG 243
           YF  A      SW V+K A      + D AD   W AG
Sbjct: 11  YFEYAVGVLLCSWPVMKQAVEEEWADVDTADKRDWMAG 48


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 493 IPALGSWCGLLVSPAKDARASATAFSMKWS 404
           I  +GS+ GLL SP     A + AF   WS
Sbjct: 198 ILTMGSFAGLLPSPYLSTYAGSKAFLSNWS 227


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 637 YDFLPRALPLAHRSQRPVPVEQLEYR-HQLLEFQHRPTF-VRF 515
           YD+LP       +    + +EQ  +R H L+   HRPTF VR+
Sbjct: 182 YDYLPP------KKVSDILIEQFFFRCHMLINVLHRPTFYVRY 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,085
Number of Sequences: 5004
Number of extensions: 31666
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)