Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00899
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643     29   3.4  
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000...    29   4.5  
10_06_0092 + 10595021-10595515                                         28   5.9  

>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
          Length = 532

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +1

Query: 298 LAVFKTAQLKRKQDAAPLK*H**TAYSTSTNLGGYPTISSXXXXXXXXXPSPETRATHTR 477
           LAV++  ++KRK+D  P      TA + S+     P+ SS         P P+     + 
Sbjct: 185 LAVYRLYKIKRKEDEEPSN----TAAAASST--DEPSTSSALPPPTPPRPLPDMAGPSSA 238

Query: 478 TPALVSLRLGYAGS 519
           TP L     G AGS
Sbjct: 239 TPLLPLQLPGLAGS 252


>01_05_0544 +
           23098921-23098953,23099209-23099272,23099942-23100084,
           23100246-23100719,23100950-23101123,23101230-23101367,
           23101489-23101589,23101910-23102183
          Length = 466

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 399 ISDHFIEKAVAEARASFAGDTSNP--HQDPSAGIAAFRLCWKRTKVGR 536
           I D F++KA   A+ S  GD  NP  HQ P      +    K   +G+
Sbjct: 312 IYDAFVKKATEMAKKSVVGDPFNPRVHQGPQIDKEQYEKILKYIDIGK 359


>10_06_0092 + 10595021-10595515
          Length = 164

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 344 AASCFRFSWAVLKTAKARSTGERDVADVGRWAAGTD 237
           A +CF F  A   TA A+ T E  V   GR  AGTD
Sbjct: 10  ALACFLFFLAAATTASAQCTFEILVKTDGRRNAGTD 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,518
Number of Sequences: 37544
Number of extensions: 272325
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)