Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00899
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   7e-22

>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score =  101 bits (241), Expect = 7e-22
 Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 10/94 (10%)
 Frame = +3

Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEA------ 437
           TLPGG+CFGSFQ CPTKAEA+RSAAKIALMNSVFNEH SR+I+D FI++AV EA      
Sbjct: 210 TLPGGSCFGSFQPCPTKAEAKRSAAKIALMNSVFNEHPSRKITDDFIDQAVHEAQGTEAK 269

Query: 438 ----RASFAGDTSNPHQDPSAGIAAFRLCWKRTK 527
               R + +    +PH +P+ G+ AFR   +  K
Sbjct: 270 VAAKRRTMSLKPQDPH-NPNTGVGAFRFMLEANK 302



 Score =  101 bits (241), Expect = 7e-22
 Identities = 44/53 (83%), Positives = 49/53 (92%)
 Frame = +2

Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
           MLEANKGRTMLEFQELMT+FQLLHWNGSL+AMR+R CSRQEV AHY+ R +DD
Sbjct: 297 MLEANKGRTMLEFQELMTIFQLLHWNGSLKAMRDRNCSRQEVFAHYNERIIDD 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,814
Number of Sequences: 59808
Number of extensions: 276532
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)