Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00899
(672 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-li... 118 3e-26
BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse) pr... 91 4e-18
AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens ... 91 4e-18
EF614253-1|ABR09276.1| 473|Homo sapiens nuclear receptor subfam... 33 1.2
DQ911122-1|ABJ52965.1| 434|Homo sapiens orphan nuclear receptor... 33 1.2
AY091855-1|AAM26736.1| 434|Homo sapiens steroid and xenobiotic ... 33 1.2
AJ009936-3|CAB55491.1| 379|Homo sapiens nuclear hormone recepto... 33 1.2
AJ009936-2|CAB55490.1| 457|Homo sapiens nuclear hormone recepto... 33 1.2
AJ009936-1|CAB55489.1| 434|Homo sapiens nuclear hormone recepto... 33 1.2
AF364606-2|AAK38720.1| 434|Homo sapiens orphan nuclear receptor... 33 1.2
AF364606-1|AAK38722.1| 473|Homo sapiens orphan nuclear receptor... 33 1.2
AF084645-1|AAC64558.1| 434|Homo sapiens orphan nuclear receptor... 33 1.2
AF084644-1|AAC64557.1| 473|Homo sapiens orphan nuclear receptor... 33 1.2
AF061056-1|AAD05436.1| 434|Homo sapiens orphan nuclear receptor... 33 1.2
BC017304-1|AAH17304.2| 433|Homo sapiens NR1I2 protein protein. 31 2.8
>BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-like
protein.
Length = 337
Score = 118 bits (283), Expect = 3e-26
Identities = 58/84 (69%), Positives = 66/84 (78%)
Frame = +3
Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
TLPGG+CFGSFQ CPTKAEARRSAAKIALMNSVFNEH SRRI+D FIEK+V+EA ASF G
Sbjct: 141 TLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNG 200
Query: 456 DTSNPHQDPSAGIAAFRLCWKRTK 527
+ +P+ GI AFR + K
Sbjct: 201 NREEA-DNPNTGIGAFRFMLESNK 223
Score = 105 bits (251), Expect = 2e-22
Identities = 47/53 (88%), Positives = 52/53 (98%)
Frame = +2
Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
MLE+NKG++MLEFQELMTVFQLLHWNGSL+AMRERQCSRQEV+AHYS RALDD
Sbjct: 218 MLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDD 270
Score = 37.1 bits (82), Expect = 0.057
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 148 VNVVQALQEFWQVKXXXXXXXXXXXLVIY*SVPAAHRP 261
VNVV+ALQEFWQ+K LV+Y VP+ P
Sbjct: 98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135
>BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse)
protein.
Length = 282
Score = 90.6 bits (215), Expect = 4e-18
Identities = 38/53 (71%), Positives = 49/53 (92%)
Frame = +2
Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
MLE+N G+TMLEFQELMT+FQLLHWNGSL+A+RE +CSRQEV+++YS +LD+
Sbjct: 148 MLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDE 200
Score = 87.4 bits (207), Expect = 4e-17
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = +3
Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
TLPGG+CFG+FQ C ++AEARR AAK+AL+NS+FNE SRRI+ FI ++V EA AS +G
Sbjct: 71 TLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG 130
Query: 456 DTSNPHQDPSAGIAAF 503
T + DPS + A+
Sbjct: 131 -TLDDADDPSTSVGAY 145
Score = 32.3 bits (70), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 136 ILSTVNVVQALQEFWQVKXXXXXXXXXXXLVIY*SVPAAHRP 261
+ +NVV LQEFW+ K +V+Y S+PA P
Sbjct: 24 VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPP 65
>AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens
cDNA FLJ25534 fis, clone CBR08513. ).
Length = 282
Score = 90.6 bits (215), Expect = 4e-18
Identities = 38/53 (71%), Positives = 49/53 (92%)
Frame = +2
Query: 509 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDD 667
MLE+N G+TMLEFQELMT+FQLLHWNGSL+A+RE +CSRQEV+++YS +LD+
Sbjct: 148 MLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDE 200
Score = 87.4 bits (207), Expect = 4e-17
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = +3
Query: 276 TLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFNEHESRRISDHFIEKAVAEARASFAG 455
TLPGG+CFG+FQ C ++AEARR AAK+AL+NS+FNE SRRI+ FI ++V EA AS +G
Sbjct: 71 TLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG 130
Query: 456 DTSNPHQDPSAGIAAF 503
T + DPS + A+
Sbjct: 131 -TLDDADDPSTSVGAY 145
Score = 32.3 bits (70), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 136 ILSTVNVVQALQEFWQVKXXXXXXXXXXXLVIY*SVPAAHRP 261
+ +NVV LQEFW+ K +V+Y S+PA P
Sbjct: 24 VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPP 65
>EF614253-1|ABR09276.1| 473|Homo sapiens nuclear receptor subfamily
1, group I, member 2 protein.
Length = 473
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 185 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 240
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 241 VRKDLCSL 248
>DQ911122-1|ABJ52965.1| 434|Homo sapiens orphan nuclear receptor
protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>AY091855-1|AAM26736.1| 434|Homo sapiens steroid and xenobiotic
sensing nuclear receptor SXR protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>AJ009936-3|CAB55491.1| 379|Homo sapiens nuclear hormone receptor
PRR1-B protein.
Length = 379
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 91 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 146
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 147 VRKDLCSL 154
>AJ009936-2|CAB55490.1| 457|Homo sapiens nuclear hormone receptor
PRR1-C protein.
Length = 457
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 169 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 224
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 225 VRKDLCSL 232
>AJ009936-1|CAB55489.1| 434|Homo sapiens nuclear hormone receptor
PRR1-A protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>AF364606-2|AAK38720.1| 434|Homo sapiens orphan nuclear receptor
PXR.1 protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>AF364606-1|AAK38722.1| 473|Homo sapiens orphan nuclear receptor
PAR2 protein.
Length = 473
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 185 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 240
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 241 VRKDLCSL 248
>AF084645-1|AAC64558.1| 434|Homo sapiens orphan nuclear receptor
protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>AF084644-1|AAC64557.1| 473|Homo sapiens orphan nuclear receptor
protein.
Length = 473
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 185 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 240
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 241 VRKDLCSL 248
>AF061056-1|AAD05436.1| 434|Homo sapiens orphan nuclear receptor
PXR protein.
Length = 434
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA-LGSWCGLLVSPAKDARASATAFSMKWSD 401
EQ +L++ Q + F H N +P L S C L S +R A KWS
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAA----KWSQ 201
Query: 400 IRRDSCSL 377
+R+D CSL
Sbjct: 202 VRKDLCSL 209
>BC017304-1|AAH17304.2| 433|Homo sapiens NR1I2 protein protein.
Length = 433
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 577 EQLEYRHQLLEFQHRPTFVRFQHNLNAAIPALGSWCGLLVSPAKDARASATAFSMKWSDI 398
EQ +L++ Q + F H N L S C L S +R A KWS +
Sbjct: 146 EQRMMIRELMDAQMKTFDTTFSHFKNFRPGVLSSGCELPESLQAPSREEAA----KWSQV 201
Query: 397 RRDSCSL 377
R+D CSL
Sbjct: 202 RKDLCSL 208
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,445,855
Number of Sequences: 237096
Number of extensions: 1356609
Number of successful extensions: 3287
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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