Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00899
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    27   0.16 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -3

Query: 631 FLPRALPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRFQHNLNAAIPA---LGSWCGLL 461
           F+P +L L HR+  PV ++  +  H        PT+     +++  +P    LG +C L 
Sbjct: 158 FVPISLGL-HRANEPVVLDDSKEEHPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCRLY 216

Query: 460 VSPAKDARA 434
               K  ++
Sbjct: 217 CYAQKHVKS 225


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 EFQELMTVFQLLHWNGSLRAMR 607
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 EFQELMTVFQLLHWNGSLRAMR 607
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 EFQELMTVFQLLHWNGSLRAMR 607
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 603 IALSDPFQWSSWNTVISSWNSSI 535
           I +S   QWSS +T+  +W   +
Sbjct: 488 IFMSSSLQWSSTHTLDVAWRRKV 510


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 603 IALSDPFQWSSWNTVISSWNSSI 535
           I +S   QWSS +T+  +W   +
Sbjct: 526 IFMSSSLQWSSTHTLDVAWRRKV 548


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 DVYRADGILSTVNVVQALQEF 177
           DVY AD + +T NV+ A  ++
Sbjct: 177 DVYNADIMAATSNVIIASMQY 197


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 DVYRADGILSTVNVVQALQEF 177
           DVY AD + +T NV+ A  ++
Sbjct: 177 DVYNADIMAATSNVIIASMQY 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,238
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)