Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00898
(759 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
AM292356-1|CAL23168.2| 251|Tribolium castaneum gustatory recept... 23 2.0
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 23 3.5
AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory recept... 23 3.5
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 21 8.1
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 21 8.1
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 21 8.1
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + +I Y++F I C +ISS
Sbjct: 191 YACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISS 227
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + +I Y++F I C +ISS
Sbjct: 191 YACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISS 227
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + +I Y++F I C +ISS
Sbjct: 191 YACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISS 227
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + +I Y++F I C +ISS
Sbjct: 191 YACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISS 227
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + +I Y++F I C +ISS
Sbjct: 191 YACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISS 227
>AM292356-1|CAL23168.2| 251|Tribolium castaneum gustatory receptor
candidate 35 protein.
Length = 251
Score = 23.4 bits (48), Expect = 2.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 569 WYFITINQCFVI 534
WY+ITI+ F+I
Sbjct: 5 WYYITISMAFII 16
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 551 NQCFVISSCQQCFGSYNNCSFLVL 480
N+CF S + C+ NC +L L
Sbjct: 1113 NRCFFPSKIRICWNVLLNCVYLFL 1136
>AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory receptor
candidate 20 protein.
Length = 393
Score = 22.6 bits (46), Expect = 3.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 575 FYWYFITINQCFVISSCQQC-FGSYNNCSFLVLNCLNGKTRPGLEKITTG 429
F+ F+ + +++ QQ F + L + LNG R GLE++ G
Sbjct: 169 FFKRFLPVYVSYLLIFVQQIPFCFFVRVIRLKIEDLNGAFRAGLERVQNG 218
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 612 YIETCLEDFFPSFLLVFYHHQSV 544
Y T E+ PS V+YHHQ++
Sbjct: 48 YGYTGSEETPPSPQEVYYHHQTI 70
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 612 YIETCLEDFFPSFLLVFYHHQSV 544
Y T E+ PS V+YHHQ++
Sbjct: 48 YGYTGSEETPPSPQEVYYHHQTI 70
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 612 YIETCLEDFFPSFLLVFYHHQSV 544
Y T E+ PS V+YHHQ++
Sbjct: 48 YGYTGSEETPPSPQEVYYHHQTI 70
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,498
Number of Sequences: 336
Number of extensions: 4138
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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