Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00898
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    27   2.9  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   3.8  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   3.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   6.7  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   6.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   6.7  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   8.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   8.9  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 454 GLVFPFRQFNTRKEQLLYEPKHCWQLLITKH 546
           G +FP +    RK ++L  PKH  Q L+  H
Sbjct: 202 GSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 241 IFENSRPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLE 390
           + ENS  ++ND  +E T  + +  +S     +K +++ +      SNW +
Sbjct: 71  LVENSESYINDASFEPTVPIYESHVSAPGISKKKKNIKDTAG---SNWFD 117


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 GYLLEPYTCCHQITSNYVSAKYSTNVQ-NLPRLPVPKLETTLNKYLK 250
           G+ +  Y C  +I  N+ S+ Y      N+  L + K+E+T NK +K
Sbjct: 21  GFGIHQYICT-EILENFKSSTYVVITDSNIAPLYLEKIESTFNKSIK 66


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 585 KNPLDMSQYKKIFGTCRIPWEKRDK 659
           K P+DM +Y K+ G    P E+ +K
Sbjct: 424 KKPIDMEEYSKVSGKVFRPVEEMEK 448


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPV 435
           RP L+  E +I  + + + ++  STG  L +  +   E+  +  E + LN    E R  V
Sbjct: 236 RPPLHRSEQKIANTPISNNVTVESTGTNLHTHSQLNPENEQSSSEFYSLN-PQSEIRKEV 294

Query: 436 VIFSSP 453
           V+   P
Sbjct: 295 VVTDQP 300


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +1

Query: 232  IK*IFENSRPHLNDQEYEITKSLVKDFISEGS--TGQKLQSL-----LENRAEHHSNWLE 390
            IK +F+ +    N+Q   I++SL+KD  SEGS  T + L+S      +E  A    ++ E
Sbjct: 940  IKLVFKEAN---NEQAQSISRSLIKD--SEGSINTNETLESTSIVNEIEESAVQTKSYSE 994

Query: 391  QWWLNT 408
              W  T
Sbjct: 995  SMWNKT 1000


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 349 LLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSPGLVFPFRQFNTRKEQLLYEPKHCWQ 528
           L+  + E    W   +W   A++   +P+  F      FP   F   KE L+Y  K    
Sbjct: 53  LIATKLEVPKRW---FWHFYAFISLLNPLFTFFILNTNFPIPIFKNIKEDLMYSKKLQVL 109

Query: 529 LLI 537
           LLI
Sbjct: 110 LLI 112


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 134 TCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLK 250
           T C  ++S ++  K  +  Q+LP  P P   ++ N  L+
Sbjct: 401 TTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLE 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,759
Number of Sequences: 5004
Number of extensions: 70640
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)