Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00898
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0105 + 19096185-19096193,19096534-19097253                       31   0.75 
04_04_0884 + 29084341-29084590,29084670-29084800,29084890-290851...    31   0.75 
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    31   1.00 
07_01_1185 + 11256857-11257330                                         29   5.3  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   7.0  
04_04_1550 - 34332948-34335986                                         28   7.0  
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139...    28   9.3  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    28   9.3  

>11_05_0105 + 19096185-19096193,19096534-19097253
          Length = 242

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 649 FSQGILHVPKIFLY*DMSRGFFPIIS 572
           F +G+L VPKIFLY D  R F  +++
Sbjct: 88  FERGVLRVPKIFLYDDAERMFLNLMA 113


>04_04_0884 +
           29084341-29084590,29084670-29084800,29084890-29085132,
           29085223-29085481,29085597-29085832
          Length = 372

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 675 YCYMTIYHVFPKVFCMFRKFSY---IETCLEDFFPSFLLV-FYHHQSVLCNQQLPTMFW 511
           + Y   Y +  ++   +R++ +   ++ C    FP FL +   +  S LCN +   +FW
Sbjct: 275 FVYANTYEIVMEIIQQYRQYGFENALDPCCGGSFPPFLCISIANSTSTLCNDRSKYVFW 333


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 573 EMMGKNPLDMSQYKKIFGTCRIPWEKRDKLSYNNSKHVTVIHNNHIFHVDVWGE---DDI 743
           + M +  LD + + K      + WEKR+K++   +K +  +H+  +    + G+    +I
Sbjct: 649 DYMLQGSLDKALHGKHDSKDSLSWEKRNKIAIGIAKALEYLHHGSVTQSVIHGDVKSSNI 708

Query: 744 LLSED 758
           LLSED
Sbjct: 709 LLSED 713


>07_01_1185 + 11256857-11257330
          Length = 157

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 ISEGSTGQKLQSLLENRAEHHSNWLEQWW 399
           I  G T +++  LL + A H + W   WW
Sbjct: 95  IHRGETKRRIDGLLADLALHKAGWRRWWW 123


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -2

Query: 200 VNFGRL*NIWQKHSCLLFDGNRYKVLINILCRHSL 96
           ++F ++  + +K+S +L  GNRYK  ++  C+H+L
Sbjct: 434 ISFSKI-TVPEKYS-ILIRGNRYKEALDFACKHNL 466


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 579 MGKNPLDMSQYKKIFGTCRIPWEKRDKLSYNNSKHVTVIH---NNHIFHVDVWGEDDILL 749
           M    LD   +++  G   + W+KR +++  +++ +  +H     HI H D+    +ILL
Sbjct: 811 MENGSLDYWLHERADGGALLDWQKRLRIAQGSARGLAYLHLSCEPHILHRDI-KSSNILL 869

Query: 750 SED 758
            E+
Sbjct: 870 DEN 872


>02_04_0086 +
           19610899-19610992,19613399-19613652,19613744-19613955,
           19614059-19614320,19614432-19614728
          Length = 372

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 361 RAEHHSNWLEQWWLNTAYLEYRDPVVIFS 447
           R  HH+ WL  WW NT  L     V+ F+
Sbjct: 226 RVAHHAPWLAYWW-NTQKLFPASSVISFN 253


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 602 HV*RIFSHHFYWYFITINQCFVISSCQQ 519
           H+ RI   HF +  +T +QC V+  C Q
Sbjct: 480 HIERILHDHFLFRKLTDSQCHVLLDCMQ 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,721,336
Number of Sequences: 37544
Number of extensions: 380288
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)