Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00898
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16) 77 2e-14
SB_50001| Best HMM Match : Carn_acyltransf (HMM E-Value=0.077) 73 2e-13
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_339| Best HMM Match : Sterile (HMM E-Value=4.7) 54 1e-07
SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13) 40 0.002
SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_37472| Best HMM Match : Carn_acyltransf (HMM E-Value=1.8e-06) 31 1.0
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 28 7.2
SB_5788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1) 28 9.5
>SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)
Length = 324
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/87 (39%), Positives = 54/87 (62%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPV 435
RP ++D++YE TKSLV +F G G++LQ++L+ R N++ +WW N +L RD V
Sbjct: 27 RPLVDDKDYERTKSLVDEFRKSGGVGERLQAILKERERTTENYVTEWWSNN-FLSARDSV 85
Query: 436 VIFSSPGLVFPFRQFNTRKEQLLYEPK 516
VI SPG FP F+ + +Q+ + +
Sbjct: 86 VINLSPGFTFPKEDFSNKLDQIRFSAR 112
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +3
Query: 510 AKTLLAAADYKALIDGDKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRD---KLSYNNSK 680
A+ L A+++ +ID D++ ++ +G +P+ M QYK RIP K D +K
Sbjct: 111 ARLLHNTANFRDMIDNDELSIDRVGDSPMSMYQYKLFLCGSRIPRPKIDVYFVAPKGEAK 170
Query: 681 HVTVIHNNHIFHVDVWG 731
HV V+HNN + +DV+G
Sbjct: 171 HVVVVHNNQFYSLDVYG 187
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 191 QNLPRLPVPKLETTLNKYLKTV 256
++LP+LP+P L+ T++KYL V
Sbjct: 5 KDLPKLPLPPLQQTMDKYLAAV 26
>SB_50001| Best HMM Match : Carn_acyltransf (HMM E-Value=0.077)
Length = 240
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/87 (37%), Positives = 50/87 (57%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPV 435
RP +ND ++E T+ LV +F + G+ LQ L +A+ NW+ +WW N AYL+ R PV
Sbjct: 72 RPLINDDDFENTQELVNEFRKKDGIGEILQGKLLEKAKKTDNWMAEWWDNIAYLDVRVPV 131
Query: 436 VIFSSPGLVFPFRQFNTRKEQLLYEPK 516
VI +P FP F+ R + + Y +
Sbjct: 132 VINYNPSCTFPKENFSDRFDFIRYSTR 158
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 194 NLPRLPVPKLETTLNKYLKTV 256
+LP+LPVP L+ T++KYL +
Sbjct: 51 DLPKLPVPALDDTMDKYLNAI 71
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 558 DKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDK---LSYNNSKHVTVIHNNHIFHVDVW 728
D++ ++ MG PL+M QYK F CR+P RDK + +KH+ V H N + VDV+
Sbjct: 1440 DQLSIDKMGNKPLNMYQYKLFFCGCRVPQLNRDKYYVAAKGQAKHIVVAHRNQFYSVDVY 1499
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWL 387
RP +ND ++E T+ LV +F +G G+ LQ L RA+ NWL
Sbjct: 1194 RPLINDDDFENTQVLVNEFRKKGGIGEILQGKLLERAKKTDNWL 1237
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNW 384
RP +ND ++E T+ LV +F +G G+ LQ L RA+ NW
Sbjct: 1285 RPLINDDDFENTQVLVNEFRKKGGIGEILQGKLLERAKKTDNW 1327
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNW 384
RP +ND ++E T+ LV +F +G + LQ L RA+ NW
Sbjct: 1375 RPLINDDDFENTQVLVNEFRKKGGIREILQGKLLERAKKTDNW 1417
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 194 NLPRLPVPKLETTLNKYLKTV 256
+LP+LPVP L+ T++KYL +
Sbjct: 1264 DLPKLPVPALDDTMDKYLNAI 1284
>SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)
Length = 206
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 558 DKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDK---LSYNNSKHVTVIHNNHIFHVDVW 728
D++ ++ MG PL+M QYK F CR+P RDK + +KH+ V H N + VDV+
Sbjct: 96 DQLSIDKMGNKPLNMYQYKLFFCGCRVPQLNRDKYYVAAKGQAKHIVVAHRNQFYSVDVY 155
>SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 558 DKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDK---LSYNNSKHVTVIHNNHIFHVDVW 728
+++ ++ +G PL+M QYK CR+P RDK +KH+ V H N + VDV+
Sbjct: 2 EQLSIDKIGNKPLNMYQYKLFLCGCRVPQLNRDKYYVAPKGQAKHIVVAHRNQFYSVDVY 61
>SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 591 PLDMSQYKKIFGTCRIPWEKRDKL-SYNNSKHVTVIHNNHIFHVDVWGEDDILLS 752
PLDMSQY ++F + RIP +DKL ++ ++H+ ++H F D D ++S
Sbjct: 19 PLDMSQYGRLFCSTRIPHPGKDKLATHEGARHMLIMHKGKFFVFDTLTTDGNIVS 73
>SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPV 435
+P L+ +EY + L KDF E + G KLQ +L+ ++ +N+ WW YL R P+
Sbjct: 134 KPLLDSEEYNKMEELSKDF--EKNLGPKLQFILQLKSWWATNYCTDWWEKYVYLMGRSPL 191
Query: 436 VIFSS 450
I S+
Sbjct: 192 PINSN 196
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 194 NLPRLPVPKLETTLNKYLKTV 256
+LPR+PVP L++T ++L +V
Sbjct: 113 SLPRMPVPPLKSTCQRFLSSV 133
>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
Length = 507
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 247 ENSRPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQ 393
E+ + L D+EY T+ +V +F + G+KLQ LE R + H NW++Q
Sbjct: 72 ESVKHLLTDEEYMQTEFVVNEF--QSGIGKKLQQKLEKRGKEHRNWVKQ 118
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 561 KIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDKL 662
++ + MG PL MSQY ++F CRIP + D L
Sbjct: 119 QLKIGKMGNKPLCMSQYLRLFSECRIPGKDLDSL 152
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 134 TCCHQITSNYVSAKYSTNV---QNLPRLPVPKLETTLNKYLKTV 256
+C + + +S+K T ++LP LPV LE T KYL++V
Sbjct: 31 SCVNLVHLKKMSSKQETTFMYQEHLPSLPVQTLEHTCGKYLESV 74
>SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 191 QNLPRLPVPKLETTLNKYLKTVGLT*TIKNMK*LNHLS-KTLSQKGVLDKNYRVYW 355
++LPRLP+PKLE T +YL + T + + +++ K Q+G D ++ + +
Sbjct: 29 KSLPRLPIPKLEGTCRRYLDSQKPLLTPEQYQYTKNITEKFQKQEGPADTSHNIIY 84
>SB_37472| Best HMM Match : Carn_acyltransf (HMM E-Value=1.8e-06)
Length = 357
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 AKTLLAAADYKALIDGDKI-PVEMMGKNPLDMSQYKKIFGTCRIPWEKRDKLSYNNSKHV 686
A + A Y+ I +++ P MG PL Q+++ F T RIP +++ L + +
Sbjct: 148 ANMIFALIYYRKQIMKERLEPQFAMGIVPLCSEQFRRTFNTTRIPGKEQGALETLSVQSF 207
Query: 687 TVIHNNHIFHV 719
+I + H+F +
Sbjct: 208 GIILSLHLFPI 218
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 624 GTCRIPWEKRDKLSYNNSKHVTVI 695
G CR P +K DKLS N + VT++
Sbjct: 422 GKCRTPEKKDDKLSKENYRPVTIL 445
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 617 FLILRH--V*RIFSHHFYWYFITINQCFVISSCQQCFGSYNNCSF 489
F+I+ H + IF+HH+++ IT + FVI + F + + F
Sbjct: 1110 FVIITHHYIFSIFTHHYFFSIITHHYSFVIITYHYIFSIFTHHYF 1154
>SB_5788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 194 NLPRLPVPKLETTLNKYLKTV 256
+LPR+PVP L++T ++L +V
Sbjct: 13 SLPRMPVPPLKSTCQRFLSSV 33
>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
Length = 641
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Frame = +2
Query: 26 KRKSIKNNHEFVSFIIPMLRRINIMNAYKGYLLEPYTCCHQITSNYVSAK----YSTN-V 190
KR +++N + + IPM +R + NAY P CH + + Y + Y N V
Sbjct: 559 KRHAVQNAYRKLR-AIPMYKRNAVQNAYIKLRAIPMYKCHAVQNAYRKLRAIPMYKRNAV 617
Query: 191 QN----LPRLPVPKLETTLNKYLK 250
QN L +P+ K N Y K
Sbjct: 618 QNAYRKLRAIPMYKRHAVQNAYRK 641
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,567,473
Number of Sequences: 59808
Number of extensions: 477299
Number of successful extensions: 1107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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