BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00898
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical pr... 55 5e-08
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 46 2e-05
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 46 2e-05
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 46 2e-05
Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z68106-5|CAA92129.1| 557|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z81127-9|CAB03394.3| 735|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z81056-11|CAB02911.3| 735|Caenorhabditis elegans Hypothetical p... 41 8e-04
AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical... 40 0.002
U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical pr... 38 0.010
AF022981-11|AAG24207.1| 746|Caenorhabditis elegans Hypothetical... 37 0.014
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 33 0.17
AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical ... 30 2.1
AF125952-7|AAD14695.1| 352|Caenorhabditis elegans Seven tm rece... 29 4.7
AC006722-13|AAK68415.2| 352|Caenorhabditis elegans Hypothetical... 29 4.7
U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF016438-9|AAB65891.2| 394|Caenorhabditis elegans Nuclear hormo... 28 8.3
AC024881-3|AAK71413.1| 306|Caenorhabditis elegans Serpentine re... 28 8.3
>Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical
protein B0395.3 protein.
Length = 614
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/81 (44%), Positives = 51/81 (62%)
Frame = +1
Query: 274 QEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSP 453
+E++ TK +V DF+ + KLQ LL+ RA+ NWL WWLN AYL R P+ + +SP
Sbjct: 48 KEFQETKQIVNDFVVKDLP--KLQELLQKRADALPNWLTPWWLNIAYLAARTPLPVVTSP 105
Query: 454 GLVFPFRQFNTRKEQLLYEPK 516
G++FP +NT + QL Y K
Sbjct: 106 GVMFPKFDYNTEEGQLEYAAK 126
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Frame = +3
Query: 510 AKTLLAAADYKALIDGDKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDKLSY-----NN 674
AK AA + +++ +M GK+PLDMSQY+ +FGT R+P D++ Y
Sbjct: 125 AKISQAAVHFYLRAKNNQLKPDMAGKSPLDMSQYQFLFGTTRVPKVGVDEIRYGCDYKEK 184
Query: 675 SKHVTVIHNNHIFHVDVWGEDDILLS 752
+H+ VI N H+F V V ++ LS
Sbjct: 185 LQHILVIRNGHLFRVQVLDSNEQPLS 210
>Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical
protein T20B3.1 protein.
Length = 608
Score = 55.2 bits (127), Expect = 5e-08
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +1
Query: 331 GQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSPG 456
G +LQS LENRA++H NWLE WW N AY E R+P+ + S G
Sbjct: 54 GAQLQSALENRAKNHKNWLEDWWYN-AYTEIREPLAPYVSFG 94
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 340 LQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSPGLVFPFRQFNTRKEQLLY 507
LQ L AE NW ++WL Y+ R P + S+PG +FP +F T+++ + Y
Sbjct: 67 LQEQLLEIAEKSPNWATKFWLPEMYMRVRMPTPVNSNPGYIFPKVKFETKEDHIKY 122
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 197 LPRLPVPKLETTLNKYLK 250
LP+ PVP LE TL++YL+
Sbjct: 20 LPKPPVPSLEATLDRYLE 37
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 340 LQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSPGLVFPFRQFNTRKEQLLY 507
LQ L AE NW ++WL Y+ R P + S+PG +FP +F T+++ + Y
Sbjct: 67 LQEQLLEIAEKSPNWATKFWLPEMYMRVRMPTPVNSNPGYIFPKVKFETKEDHIKY 122
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 197 LPRLPVPKLETTLNKYLK 250
LP+ PVP LE TL++YL+
Sbjct: 20 LPKPPVPSLEATLDRYLE 37
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 340 LQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVVIFSSPGLVFPFRQFNTRKEQLLY 507
LQ L AE NW ++WL Y+ R P + S+PG +FP +F T+++ + Y
Sbjct: 67 LQEQLLEIAEKSPNWATKFWLPEMYMRVRMPTPVNSNPGYIFPKVKFETKEDHIKY 122
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 197 LPRLPVPKLETTLNKYLK 250
LP+ PVP LE TL++YL+
Sbjct: 20 LPKPPVPSLEATLDRYLE 37
>Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 591 PLDMSQYKKIFGTCRIPWEKRDKLSYNNS-KHVTVIHNNHIFHVDVWGEDDILLSED 758
PLDMSQYK +F RIP +++D L + S KH + H + V ++ +D LL +
Sbjct: 34 PLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGHPYAVRIFDDDGKLLDAE 90
>Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 591 PLDMSQYKKIFGTCRIPWEKRDKLSYNNS-KHVTVIHNNHIFHVDVWGEDDILLSED 758
PLDMSQYK +F RIP +++D L + S KH + H + V ++ +D LL +
Sbjct: 204 PLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGHPYAVRIFDDDGKLLDAE 260
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 191 QNLPRLPVPKLETTLNKYL 247
++L RLP+PKL T+N+YL
Sbjct: 40 KSLRRLPIPKLPDTVNRYL 58
>Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 591 PLDMSQYKKIFGTCRIPWEKRDKLSYNNS-KHVTVIHNNHIFHVDVWGEDDILLSED 758
PLDMSQYK +F RIP +++D L + S KH + H + V ++ +D LL +
Sbjct: 34 PLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGHPYAVRIFDDDGKLLDAE 90
>Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 591 PLDMSQYKKIFGTCRIPWEKRDKLSYNNS-KHVTVIHNNHIFHVDVWGEDDILLSED 758
PLDMSQYK +F RIP +++D L + S KH + H + V ++ +D LL +
Sbjct: 204 PLDMSQYKSLFCGSRIPKKEKDMLYLDASQKHFVAFYKGHPYAVRIFDDDGKLLDAE 260
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 191 QNLPRLPVPKLETTLNKYL 247
++L RLP+PKL T+N+YL
Sbjct: 40 KSLRRLPIPKLPDTVNRYL 58
>Z68106-5|CAA92129.1| 557|Caenorhabditis elegans Hypothetical
protein F41E7.6 protein.
Length = 557
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/70 (37%), Positives = 34/70 (48%)
Frame = +1
Query: 259 PHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPVV 438
P + E E +L DF S GQ LQ L+ + NWLE WW + AYL RD +
Sbjct: 33 PIVPKDELETITTLANDFASS-QNGQILQRFLKEKTISSKNWLEDWWYD-AYLTNRDS-L 89
Query: 439 IFSSPGLVFP 468
+ + G V P
Sbjct: 90 LTQNMGAVVP 99
Score = 34.7 bits (76), Expect = 0.072
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +3
Query: 537 YKALIDGDKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDKLS-YNNSK-------HVTV 692
Y +LI +KI V N DM+Q +F CR+P +D++ Y ++ HV +
Sbjct: 122 YWSLIRQEKIEVTKSRGNSWDMNQDYNLFNACRVPALPKDRIKRYFRTEAEGKCPSHVII 181
Query: 693 IHNNHIFHVDVWGEDDILLS 752
+ N H++ ++ E+ L+
Sbjct: 182 LCNGHVWKLETTCENSKFLN 201
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 194 NLPRLPVPKLETTLNKYLKTV 256
+LP LP+P+LE T+ KYLK++
Sbjct: 11 SLPSLPLPELEETIGKYLKSL 31
>Z81127-9|CAB03394.3| 735|Caenorhabditis elegans Hypothetical
protein F09F3.9 protein.
Length = 735
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 MGKNPLDMSQYKKIFGTCRIPWEKRDKLSYN-NSKHVTVIHNNHIFHVDVWGEDDILLSE 755
+G+ L YK I+ CR+P ++ D +N SKHV ++H + VD + + L S
Sbjct: 263 VGEGLLSTRHYKNIYNGCRVPGKEIDHFQWNPPSKHVLLVHKGTWYKVDTFDRNGKLYSV 322
Query: 756 D 758
D
Sbjct: 323 D 323
>Z81056-11|CAB02911.3| 735|Caenorhabditis elegans Hypothetical
protein F09F3.9 protein.
Length = 735
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 MGKNPLDMSQYKKIFGTCRIPWEKRDKLSYN-NSKHVTVIHNNHIFHVDVWGEDDILLSE 755
+G+ L YK I+ CR+P ++ D +N SKHV ++H + VD + + L S
Sbjct: 263 VGEGLLSTRHYKNIYNGCRVPGKEIDHFQWNPPSKHVLLVHKGTWYKVDTFDRNGKLYSV 322
Query: 756 D 758
D
Sbjct: 323 D 323
>AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical
protein Y46G5A.17 protein.
Length = 779
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +1
Query: 256 RPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRDPV 435
+P L+D+E++ + L + F G++LQ L ++ SN++ WW Y+ R P+
Sbjct: 192 KPILSDEEFQELEFLSERF--RKGVGRRLQRYLTLKSWFSSNYVTDWWEEFVYMRQRSPI 249
Query: 436 VIFSS 450
+I S+
Sbjct: 250 MINSN 254
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 585 KNPLDMSQYKKIFGTCRIPWEKRDK-LSYNNSKHVTV 692
K P QY+++F TCR+P E+ D+ L ++++KH+ V
Sbjct: 302 KVPFCTMQYERLFNTCRVPGEEVDRLLHWDDAKHIAV 338
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 197 LPRLPVPKLETTLNKYLKTVGLT*TIKNMK*LNHLSKTLSQKGV 328
LPRLP+P L+ T+ K+L ++ + + + L LS+ +KGV
Sbjct: 172 LPRLPLPNLDDTVRKHLLSMKPILSDEEFQELEFLSERF-RKGV 214
>U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical
protein W01A11.5 protein.
Length = 746
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +1
Query: 223 RDYIK*IFENSRPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWL 402
+D I ++ + L++QEYEI +F+ + G+KLQ + N++ +W
Sbjct: 157 KDTISEYLDSMKHILSEQEYEIVAKQAHEFLE--NEGKKLQRYTWIYSLFTDNYVTSFWQ 214
Query: 403 NTAYLEYRDPVVIFSS 450
AYL R P++I SS
Sbjct: 215 KYAYLHGRYPLMINSS 230
>AF022981-11|AAG24207.1| 746|Caenorhabditis elegans Hypothetical
protein W03F9.4 protein.
Length = 746
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 546 LIDGDKIPVEMMGKNPLDMSQYKKIFGTCRIPWEKRDK-LSYNNSKHVTVIHNNHIFHVD 722
+ +K+ +G PL QY + + T RIP E DK + ++KH+ V H + +D
Sbjct: 259 IFKSEKMKPVSLGGIPLCAQQYAEYYRTLRIPHETSDKMIRLPDAKHIAVYHKGCWYKID 318
Query: 723 VW 728
++
Sbjct: 319 IF 320
Score = 35.9 bits (79), Expect = 0.031
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +1
Query: 217 KARDYIK*IFENSRPHLNDQEYEITKSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQW 396
K D + + +P L ++E+ ++F S + G LQ+ L + N+L W
Sbjct: 152 KVEDTVAKYLQTMKPILGEKEFLELSEQAEEFKSTIAGG--LQNKLWMKWAVSKNYLSDW 209
Query: 397 WLNTAYLEYRDPVV 438
W Y+ YRD ++
Sbjct: 210 WKEVVYMRYRDSLI 223
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 579 MGKNPLDMSQYKKIFGTCRIPWEKRDKLSYNN-SKHVTVIHNNHIFHVDVWGEDDILLS 752
+G + Y+ I+ R+P + D +N S+H V+H + VD ED L S
Sbjct: 250 VGDGLMSTRHYRNIYNGSRVPGAEIDNFQWNPPSRHALVVHKGTWYKVDTCDEDGRLYS 308
>AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical
protein Y113G7A.1 protein.
Length = 325
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 400 ATIVQASLNDVLLYFPINSVIFVQY 326
A I+QAS+N L P+N+VI++ Y
Sbjct: 237 ALILQASVNTFLFIVPVNAVIYIVY 261
>AF125952-7|AAD14695.1| 352|Caenorhabditis elegans Seven tm
receptor protein 258 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = -2
Query: 719 YMEYMIIMDDSDMLAIVI*QFITFFPRYSACSENFLILRHV---*RIFSHHFYWYFITIN 549
+ E I++ I++ + FP+Y+AC+ N L + I + HF + +++I
Sbjct: 57 FAEKPIMLTKESAFLIIMNWRESIFPKYAACTLNLLFIGFFGMSVAILALHFIYRYLSIT 116
Query: 548 QCFVISSCQQCFGSYNNCSFLVLNCLNGKT 459
+ S+ + F S+ + ++ LNG T
Sbjct: 117 K----SNLLKTFDSWKIVPWFMIPLLNGIT 142
>AC006722-13|AAK68415.2| 352|Caenorhabditis elegans Hypothetical
protein Y19D10A.2 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = -2
Query: 719 YMEYMIIMDDSDMLAIVI*QFITFFPRYSACSENFLILRHV---*RIFSHHFYWYFITIN 549
+ E I++ I++ + FP+Y+AC+ N L + I + HF + +++I
Sbjct: 57 FAEKPIMLTKESAFLIIMNWRESIFPKYAACTLNLLFIGFFGMSVAILALHFIYRYLSIT 116
Query: 548 QCFVISSCQQCFGSYNNCSFLVLNCLNGKT 459
+ S+ + F S+ + ++ LNG T
Sbjct: 117 K----SNLLKTFDSWKIVPWFMIPLLNGIT 142
>U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical
protein K06A9.2 protein.
Length = 516
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 262 HLNDQEYE-ITKSL-VKDFISEGSTGQKLQSLLENRAEHHSNWLEQWWLNTAYLEYRD 429
HLN+ + I K L KD + + L+ +N ++WW++ + Y+D
Sbjct: 4 HLNELVLDYIGKQLNAKDLLRLSMANKALRGFFDNECYWQKLMFKRWWVDRKFFRYQD 61
>AF016438-9|AAB65891.2| 394|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 103 protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 594 LDMSQYKKIFGTCRIPWEKRDKLSYNNSKHVTVIHNNHIFHV 719
LD + +I TC + W + DKLS +K V +N + V
Sbjct: 202 LDENLKMEILKTCWVSWIRLDKLSETANKRVNATLDNSLLMV 243
>AC024881-3|AAK71413.1| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein6 protein.
Length = 306
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 678 CYCYMTIYHVFPKVFCMFRKFSYIETCLEDFFPSFLLVFYHHQSVLCNQQLPTMFWLI 505
CY ++IY F V M F ++ + FP F F ++ LP +F +I
Sbjct: 81 CYTKVSIYTFFETVQAMIMLFLVVDILVIVKFPRFYHTFSTEWYIILALILPVIFGII 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,319,704
Number of Sequences: 27780
Number of extensions: 387427
Number of successful extensions: 1040
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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