Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00898
(759 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 1.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 2.4
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 2.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.4
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 24.6 bits (51), Expect = 1.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Frame = +1
Query: 271 DQEYEITKSLVKDFIS----------EGSTGQKLQSLLENRAEHHSNW 384
++E E+ K+L+K +S EGS G L++LL+ E + W
Sbjct: 705 EEEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAEW 752
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 210
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 242 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 278
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y C E ++ + +I Y++F I C +ISS
Sbjct: 242 YQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISS 278
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 155 SNYVSAKYSTNVQNLPRLPVP 217
+NY S K N+ N+ ++PVP
Sbjct: 316 NNYNSKKLYYNIINIEQIPVP 336
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 155 SNYVSAKYSTNVQNLPRLPVP 217
+NY S K N+ N+ ++PVP
Sbjct: 327 NNYNSKKLYYNIINIEQIPVP 347
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 YSACSENFLILRHV*RIFSHHFYWYFITINQCFVISS 528
Y+ C E ++ + V I Y++F I C +I+S
Sbjct: 211 YNCCPEPYIDITFVVIIRRRTLYYFFNLIVPCVLIAS 247
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,498
Number of Sequences: 438
Number of extensions: 4934
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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