Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00898
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    31   0.83 
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    30   1.9  
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ...    29   4.4  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    29   4.4  
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri...    28   5.9  
At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family prote...    28   5.9  
At4g20790.1 68417.m03018 leucine-rich repeat family protein cont...    28   7.7  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   7.7  

>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 71  IPMLRRINIM----NAYKGYLLEPYTCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLN 238
           I +L R+ ++    N +KG   EP   C  +   Y++    T++ +LP+LP  +  +   
Sbjct: 310 IEILNRVKVLDLSFNDFKGPGFEPLENCKMLQQLYLAGNQITSLASLPQLPNLEFLSVAQ 369

Query: 239 KYLKTVGL 262
             LK++ +
Sbjct: 370 NKLKSLAM 377


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 603 SQYKKIFGT-CRIPWEKRDKLSYNNSKHVTVIHNNHIFHVDVWGEDDILLSED 758
           ++Y+K+  + C +PW+ R K++   ++ +T +H+    H ++    +ILL  D
Sbjct: 536 ARYRKVGSSPCHLPWDARLKIAKGIARGLTYVHDKKYVHGNL-KPSNILLGLD 587


>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
           Ca(2+)-dependent nuclease [Arabidopsis thaliana]
           GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
          Length = 323

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 534 DYKALIDGDKIPVEMMGKNPLDMSQYKKIFGTCRIPWEK-RDKLSYN--NSKHVTVIHNN 704
           D K++ DGD + V +  K+PL  S   K      +   K R+K +Y   ++ H T+I + 
Sbjct: 135 DTKSVADGDTVTVYVSSKDPLVSSSLPKDVSLAAVKRAKAREKKNYTEADALHKTIIASG 194

Query: 705 H 707
           +
Sbjct: 195 Y 195


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
            kinase, putative similar to brassinosteroid insensitive
            protein
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 642  WEKRDKLSYNNSKHVTVIHNN---HIFHVDVWGEDDILLSED 758
            WE+R K++   +K +  +H+N   HI H D+    ++LL +D
Sbjct: 937  WEERKKIAKGAAKGLCFLHHNCIPHIIHRDM-KSSNVLLDQD 977


>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
           ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
          Length = 220

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +2

Query: 140 CHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLKTVGLT*TIKNMK*LNHLSKTLSQ 319
           CHQ  S       ++N  N PRLPV +   + NK  +TV     +K+     HL   ++ 
Sbjct: 16  CHQRISTLTPK--TSNSPNYPRLPVIRSAVSRNKKEETVE---AVKSHLENCHLLAAINY 70

Query: 320 KGVLDKNYR 346
           KG+  K ++
Sbjct: 71  KGLTVKQFQ 79


>At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 372

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 292 KSLVKDFISEGSTGQKLQSLLENRAEHHSNWLEQWW 399
           K+L  +  +EG   Q+ +  L  R  H++ WL  WW
Sbjct: 194 KNLPLNVSTEGFNFQQKRDQLAVRVAHYTPWLIYWW 229


>At4g20790.1 68417.m03018 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560;
          Length = 518

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 160 LCFC--QIFYKRPKFTPSTCAKARDYIK*IFENSRPHLNDQ 276
           LCFC   +  KRP + P TC +   +   + E +    +DQ
Sbjct: 231 LCFCFGWLCVKRPDYLPRTCRRRNKFTFAMLEAATDEFSDQ 271


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 513 KTLLAAADYKALIDGDKIPV-EMMGKNPLDMSQYKKIFGTCRIPWEKRDKLSYNNSKHVT 689
           + LLA   Y     G+K+ V + M K  L    + +   T  IPWE R K++   S+ + 
Sbjct: 591 QNLLALRAYYLGPKGEKLLVFDYMSKGSLSAFLHARGPETL-IPWETRMKIAKGISRGLA 649

Query: 690 VIHNN-HIFHVDVWGEDDILLSE 755
            +H+N ++ H ++    +ILL E
Sbjct: 650 HLHSNENMIHENLTA-SNILLDE 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,810
Number of Sequences: 28952
Number of extensions: 339441
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)