Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00897
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    27   0.18 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.72 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   5.1  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +3

Query: 24  PKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINY 203
           P LK++    KR    ++E+     K         +FE   + + M+N  + Q ++ +N 
Sbjct: 55  PVLKSRSFGRKRKSISSDEENSFQGKHKSRRKAPQSFEDIQHQRVMANVRERQRTQSLN- 113

Query: 204 DVIMDQVFANIDADIEDQEK*KLSK 278
                + FA++   I      KLSK
Sbjct: 114 -----EAFASLRKSIPTMPSDKLSK 133


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 464 FHKQKIYFHYPFDFYFHSL 408
           FH Q  Y HYP ++Y H L
Sbjct: 440 FHNQ--YAHYPAEYYGHHL 456


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 654 PFVERVTFLWCL 619
           P  ERV ++WCL
Sbjct: 124 PSAERVAWMWCL 135


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 654 PFVERVTFLWCL 619
           P  ERV ++WCL
Sbjct: 124 PSAERVAWMWCL 135


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 654 PFVERVTFLWCL 619
           P  ERV ++WCL
Sbjct: 124 PSAERVAWMWCL 135


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 654 PFVERVTFLWCL 619
           P  ERV ++WCL
Sbjct: 124 PSAERVAWMWCL 135


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 12  PRAPPKLKTQQSNNKRIREPNEEDLKQSNKKT 107
           P   P LK+++ NN  +     ++++   +KT
Sbjct: 77  PSELPALKSRKLNNNNVVSSTNQEIRGPKRKT 108


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 410 VNENKNQKDSENIFSVCENHTEF 478
           V E+ N      I + CE++T+F
Sbjct: 26  VMEDANNLTQSTILTTCESNTDF 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,879
Number of Sequences: 336
Number of extensions: 2553
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)