Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00897
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    32   0.063
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    29   0.44 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    29   0.44 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.59 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   7.2  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.5  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 6    LTPRAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQE 185
            +T    P  + + S    ++ PN E +  S +     + +G FE   N +   N N+   
Sbjct: 990  VTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNEV-- 1047

Query: 186  SEPINYD 206
            S+P ++D
Sbjct: 1048 SQPFDFD 1054


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 374 FTTDKTLANSQTVNENKNQKDSENIFSV--CENHTEFQKTTNSEMPDQYISTWK 529
           F  D  +AN  TVNE+  +++ E I  +  C N+T+     NS+     ++ WK
Sbjct: 45  FKNDNAIANQTTVNESDVKRNVEKINDIYECSNNTKSPCFPNSDSRIPLVN-WK 97


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +3

Query: 15  RAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEP 194
           RAP  +  + S++     P+E D  +S   T   S T +  ++ ++ S    +D  + + 
Sbjct: 333 RAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSENS-DTSDDLTKVDS 391

Query: 195 INYDVIMDQVFANIDADIED 254
            N  ++ D V A  D + E+
Sbjct: 392 PNKSLVNDNVSAKHDKESEN 411


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 57   RIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVFANI 236
            R +EP + D   S  K K+ S T T    + D    N ND  +++ I Y  ++ Q F   
Sbjct: 1144 REKEPKDADSTYS--KEKIFSATSTVHLQLMDYDKQN-NDFVDAQEIAYTKLLQQKFIQW 1200

Query: 237  DADIEDQ 257
             A   +Q
Sbjct: 1201 RATYAEQ 1207


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +3

Query: 24   PKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAV---NDKSMSNQNDAQESE 191
            P+  +   N K   EPNEEDL ++ +K+   S        V   +D       D QE E
Sbjct: 3992 PEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKE 4050


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 9   TPRAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVND--KSMSNQNDAQ 182
           +P A P ++T  + N   +   +E    +   T+  +     ETAVND  K M+   + +
Sbjct: 422 SPVASPSIQTDPNRNPFFQNCLQESSFATESSTEKSASESVSETAVNDDCKGMNFSGNRR 481

Query: 183 ESEPIN 200
           + + +N
Sbjct: 482 QEDHLN 487


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +2

Query: 266  KTVKEASNLLEKTVENHTTATQDQFISKTQRSI-----VECFTTDKTLANSQTVNENKNQ 430
            K  ++   +L+K VE     +  + +   ++ +     ++    +K LA  +   E   +
Sbjct: 1602 KEWEKRREILQKDVEEQVAQSHQKQLDNIRKELEMRNKLKLSMLEKNLARVRAELEQSKK 1661

Query: 431  KDSENIFSVCENHTEFQKTTNSEMPDQYISTWKI 532
            KDS  I S+  +       +NSE+P   +   K+
Sbjct: 1662 KDSPAILSLEASKNTDSNKSNSEVPAAQVKEKKL 1695


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
            Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 266  KTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENK 424
            KTV+   N   K+VEN +   + + + K    + +       +AN  TVN ++
Sbjct: 863  KTVESVQNTKLKSVENDSGKAETETVGKNPEVVRKSPAKLPNIANIMTVNGHR 915


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 488 LSFEIQYDFHKQKIYFHYPFDFYFH--SLFGNWPV 390
           L++E  YD+ K+   FH     YF+   + GN PV
Sbjct: 119 LNYEKNYDYFKKLKAFHESRGLYFYHPPIIGNRPV 153


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 254 SRKIK-TVKEASNLLEKTVENH---TTATQDQFISKTQRSIVECFTT 382
           S+ IK    E  N+L KTVE H    T + D+ + +T  ++ E   T
Sbjct: 604 SKLIKQATSEKGNILPKTVETHMKALTTSVDKVLDQTAEALEEFVNT 650


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 326 TQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVCENHTEFQKTTNSEMP 505
           T+ + I      ++E    +   A+   VN N  Q D ++I    E+  E  ++ N+E  
Sbjct: 453 TEREDIDDLTDEVMETEENEAAEADYPGVNRNTRQDDVQDISMETESQNETDESQNTENV 512

Query: 506 D 508
           D
Sbjct: 513 D 513


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 72  NEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVFANID---- 239
           NE ++ ++ + T LIS    + +++ DK+  +  D + +    + +++   F        
Sbjct: 423 NEAEIMKATEDTMLISILKNYFSSLGDKAYKDATDKRVASITKFQLLLVTAFKKFSHITH 482

Query: 240 ADIEDQEK 263
           + IED+ K
Sbjct: 483 SLIEDERK 490


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 643 TSDIFVVSLPQHCRSRRH 590
           T+  +V SLPQ C  +RH
Sbjct: 375 TASAYVASLPQPCSQKRH 392


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 296 EKTVENHTTATQDQFIS--KTQRSIV-ECFTTDKTLANSQTVNENKNQKDSENIFSVCEN 466
           + T+   T      ++S  K + ++  E   ++ TLA      ENK +K S +   V EN
Sbjct: 408 DTTLHKETNKIDKLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPPVPEN 467

Query: 467 HTEFQKTTNSEMPD 508
             E      S +P+
Sbjct: 468 KAEDSVVLKSSVPE 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,089
Number of Sequences: 5004
Number of extensions: 42623
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)