Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00897
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 30 1.9
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418... 29 2.4
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 28 5.6
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200... 28 5.6
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 28 7.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 27 9.9
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 27 9.9
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 66 EPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEP 194
E ++ED+KQ + K + E++ +D+S +D + EP
Sbjct: 376 ESSDEDVKQKQTQAKKVQAPVAQESSSSDESSEEDSDMESDEP 418
>02_04_0555 -
23840634-23841035,23841388-23841501,23841742-23841844,
23842415-23842467,23842544-23842644,23842702-23842879,
23842998-23843120,23843515-23843656,23843854-23843959,
23844236-23844305,23844430-23844588,23845229-23845329,
23845410-23845503
Length = 581
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 368 ECFTTDKTLANSQTVNENKNQKDSENIFSVCENHTE 475
ECFT D LA ++ + N E + + CE E
Sbjct: 427 ECFTEDSQLATNKNIAPNTTTLGEETLHTTCEKLVE 462
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +3
Query: 21 PPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEP 194
P + + QQS ++ ++ ++ ++QSN+K K + +G + ++ ++ S P
Sbjct: 429 PQEQQQQQSQQQQQQQSQQQQMQQSNRKRKQPTSSGAANSTGTGNTVGPSTNSPPSTP 486
>01_01_0242 +
1997427-1997429,1997893-1998580,2000199-2000234,
2000786-2001114,2001178-2001855
Length = 577
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 541 VLVYLPCAYVLIWH 500
V + PCAYVLIWH
Sbjct: 249 VSLLFPCAYVLIWH 262
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 245 YRRSRKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDK 388
Y+ R I ++ ++ ENH QD ++KT+ + + +T +K
Sbjct: 202 YQEKRTIVMERKQKKAQKEEAENHLRLQQDLKLAKTEHLLWQLYTIEK 249
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 281 ASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTL-----ANSQTVNENKNQKDSEN 445
+ ++ E + +N T + QF++K +++ + K L ANSQ NEN N EN
Sbjct: 138 SEHVTEVSGKNEVTRVE-QFVAKKEKAHETSSSKGKELETQENANSQETNENSNNSSLEN 196
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENK-NQK 433
+K++ KE S LLE H+T Q ++ ++ + + N + + K +
Sbjct: 127 KKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 186
Query: 434 DSENIFSVCENHTEFQKTTNSEMPD 508
D E + CE TE + E+ +
Sbjct: 187 DCEFLKRCCETLTEENRRLQRELQE 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,846
Number of Sequences: 37544
Number of extensions: 222007
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -